Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g078060.2.1 | Tomato | plastid | 42.54 | 43.51 |
| Bra023021.1-P | Field mustard | cytosol, golgi, mitochondrion, plastid | 27.61 | 41.57 |
| KRH77313 | Soybean | mitochondrion | 25.37 | 40.96 |
| AT2G35658.2 | Thale cress | plastid | 31.34 | 40.38 |
| PGSC0003DMT400067520 | Potato | plastid | 39.55 | 39.26 |
| AT4G16840.1 | Thale cress | mitochondrion | 25.37 | 39.08 |
| VIT_16s0013g00500.t01 | Wine grape | cytosol, peroxisome, plasma membrane | 41.04 | 37.16 |
| Bra021076.1-P | Field mustard | plastid | 26.87 | 36.73 |
| CDX76585 | Canola | plastid | 26.87 | 36.73 |
| CDY43473 | Canola | plastid | 26.87 | 36.73 |
| CDX79615 | Canola | plastid | 25.37 | 36.17 |
| CDX84606 | Canola | cytosol, golgi, plasma membrane, plastid | 28.36 | 30.89 |
Protein Annotations
| ArrayExpress:VIT_00s0533g00010 | EMBL:FN595803 | EnsemblPlants:VIT_00s0533g00010.t01 | EnsemblPlantsGene:VIT_00s0533g00010 | EntrezGene:100253628 | EntrezGene:LOC100253628 |
| GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34189 | PANTHER:PTHR34189:SF2 | ProteinID:CCB53480 |
| ProteinID:CCB53480.1 | RefSeq:XP_002265824 | RefSeq:XP_002265824.1 | TMHMM:TMhelix | UniParc:UPI0001986303 | UniProt:F6HJR7 |
| wikigene:100253628 | wikigene:LOC100253628 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrUn:+:31458562..31460614
Molecular Weight (calculated)
14757.4 Da
IEP (calculated)
6.958
GRAVY (calculated)
-0.447
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRISSATRV SDEFFNSTTS PSATPDADQL PTYDPLSHVA KKERTRIRSA ENAIHAIPVV LLLCVMTLWF FSNPAVDIVN KGASIVPRQK GLTVIGNIKS
101: DPTQNGLLKD LEQDSDPTKE FLHQKGPKST ENES
101: DPTQNGLLKD LEQDSDPTKE FLHQKGPKST ENES
001: MYRSASWNRV TEDYSVPWSA PKGLWKGLDE DEPAPYDPTG QEMTKKEKSR TKFAENAVHI IPFVLLACAL VLWFFSNPDV DVGVKGDSIA ARIEGLTIEG
101: DIDNDSDGTQ TGFLGAATEV GHSKNKLKRE ANKRNRRIQA SRKVMKGFY
101: DIDNDSDGTQ TGFLGAATEV GHSKNKLKRE ANKRNRRIQA SRKVMKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDZ2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.