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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:
  • nucleus 2
  • endoplasmic reticulum 1
  • mitochondrion 2
  • plasma membrane 1
  • plastid 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane, plastid
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
iPSORT:mitochondrion
MultiLoc:plasma membrane
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra029321.1-P Field mustard cytosol, plasma membrane, plastid 100.0 100.0
CDY68478 Canola cytosol, plasma membrane, plastid 100.0 100.0
CDY23048 Canola cytosol 90.67 91.89
CDY02126 Canola cytosol, plasma membrane, plastid 90.0 91.84
AT5G61630.1 Thale cress cytosol, plasma membrane, plastid 88.0 89.8
CDX78297 Canola cytosol 62.67 62.67
VIT_16s0013g00500.t01 Wine grape cytosol, peroxisome, plasma membrane 42.0 42.57
KRG92188 Soybean cytosol, mitochondrion, plasma membrane, plastid 38.67 40.85
KRH34600 Soybean cytosol 38.67 40.85
Solyc05g052080.1.1 Tomato plastid 35.33 35.1
CDX79615 Canola plastid 17.33 27.66
CDX76585 Canola plastid 18.0 27.55
CDY43473 Canola plastid 18.0 27.55
CDX84606 Canola cytosol, golgi, plasma membrane, plastid 20.0 24.39
Protein Annotations
EnsemblPlants:CDY42867EnsemblPlantsGene:GSBRNA2T00075564001GO:A0A078JLU0GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34189PANTHER:PTHR34189:SF4ProteinID:CDY42867ProteinID:CDY42867.1ProteinID:CDY68478.1TMHMM:TMhelix
UniParc:UPI00025459B1UniProt:A0A078JLU0MapMan:35.2:::
Description
BnaAnng06920DBnaAnng06920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLU0]
Coordinates
chrLK032536:+:194225..195190
Molecular Weight (calculated)
16598.5 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.451
Length
150 amino acids
Sequence
(BLAST)
001: MYRSASWNRA TEDYSSAPPK GLWMGSMIGP LDEDEPPSYN NPPADEMVKK EKSPAKFAEK AIHIIPFVLL ACALVLWLFS NPDVVDVGMR EESIAARIEG
101: LTIEGDIDND SDGTQTGFLG ATLELSGDSD KTHYADRNRR ASRKLIKGFY
Best Arabidopsis Sequence Match ( AT5G61630.1 )
(BLAST)
001: MYRSASWNRV PEDYSSAPPK GLWMGSVIGP LDENELPSYN NPPEEMVKKE KSRAKFAENA IHIIPFVLLA CALVLWLFSN PDVDVGMREE SIAAKIEGLT
101: IEGDIDNDSD GTQTGFLGAT LELGDPDKPN LTDRTRRASR KLIKGFY
Arabidopsis Description
Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1PDG7]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.