Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400022426 | |
| PGSC0003DMT400056956 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18850.1 | PGSC0003DMT400022426 | AT4G26455.1 | 21798944 |
| AT5G18850.1 | PGSC0003DMT400056956 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g080590.2.1 | Tomato | extracellular, plasma membrane, vacuole | 95.35 | 95.35 |
| VIT_05s0020g02180.t01 | Wine grape | extracellular, plasma membrane | 65.12 | 60.87 |
| KRH50946 | Soybean | endoplasmic reticulum | 61.63 | 58.24 |
| KRH02170 | Soybean | endoplasmic reticulum | 60.47 | 57.14 |
| CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 61.63 | 55.21 |
| Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 60.47 | 54.17 |
| CDX88909 | Canola | endoplasmic reticulum, plasma membrane | 60.47 | 54.17 |
| AT5G18850.1 | Thale cress | endoplasmic reticulum, golgi | 58.14 | 50.51 |
| Bra002190.1-P | Field mustard | extracellular, plasma membrane | 32.56 | 45.9 |
| CDX92577 | Canola | extracellular | 31.4 | 44.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400081724 | EnsemblPlantsGene:PGSC0003DMG400032093 | EntrezGene:102590085 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PGSC:PGSC0003DMG400032093 | RefSeq:XP_006365267.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002967FEA | UniProt:M1D4Z0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400032093]
Coordinates
chr1:+:60661178..60662768
Molecular Weight (calculated)
9548.8 Da
IEP (calculated)
10.354
GRAVY (calculated)
0.373
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKMTFRVVI AILVVLLLYY VGRPLYWKIS ATAHDIRHNK QTVSGGFSQI VQAAQNSVGW FHDESDSGVL DVGIAAARRI LLHKVL
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Arabidopsis Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.