Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18850.1 | CDX89333 | AT4G26455.1 | 21798944 |
| AT5G18850.1 | CDX94330 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 98.96 | 98.96 |
| CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 93.75 | 93.75 |
| AT5G18850.1 | Thale cress | endoplasmic reticulum, golgi | 84.38 | 81.82 |
| CDX92577 | Canola | extracellular | 46.88 | 73.77 |
| KRH50946 | Soybean | endoplasmic reticulum | 58.33 | 61.54 |
| PGSC0003DMT400081724 | Potato | extracellular, golgi | 54.17 | 60.47 |
| KRH02170 | Soybean | endoplasmic reticulum | 56.25 | 59.34 |
| VIT_05s0020g02180.t01 | Wine grape | extracellular, plasma membrane | 56.25 | 58.7 |
| Solyc01g080590.2.1 | Tomato | extracellular, plasma membrane, vacuole | 52.08 | 58.14 |
Protein Annotations
| EnsemblPlants:CDX88909 | EnsemblPlantsGene:GSBRNA2T00149005001 | GO:A0A078DJT1 | ProteinID:CDX88909 | ProteinID:CDX88909.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EEA3A3 | MapMan:35.2 | : | : | : |
Description
BnaA03g07400D
Coordinates
chrLK031856:-:1565567..1566256
Molecular Weight (calculated)
11033.4 Da
IEP (calculated)
10.884
GRAVY (calculated)
-0.192
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MASPTPTRIS FRILILIALM VLLFYVGRPL YWKISATIHD IRHNKQSVRE GISQIVQEAQ RSVGWYHDES DSGFLEARSK KSRVSTSRRL LFAGDQ
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Arabidopsis Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.