Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
|
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18850.1 | KRH56393 | AT4G26455.1 | 21798944 |
| AT5G18850.1 | KRH62532 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02170 | Soybean | endoplasmic reticulum | 93.41 | 93.41 |
| PGSC0003DMT400081724 | Potato | extracellular, golgi | 58.24 | 61.63 |
| VIT_05s0020g02180.t01 | Wine grape | extracellular, plasma membrane | 60.44 | 59.78 |
| Solyc01g080590.2.1 | Tomato | extracellular, plasma membrane, vacuole | 56.04 | 59.3 |
| Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 61.54 | 58.33 |
| CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 61.54 | 58.33 |
| CDX88909 | Canola | endoplasmic reticulum, plasma membrane | 61.54 | 58.33 |
| Bra002190.1-P | Field mustard | extracellular, plasma membrane | 38.46 | 57.38 |
| AT5G18850.1 | Thale cress | endoplasmic reticulum, golgi | 61.54 | 56.57 |
| CDX92577 | Canola | extracellular | 37.36 | 55.74 |
Protein Annotations
| EMBL:ACUP02004720 | EnsemblPlants:KRH50946 | EnsemblPlantsGene:GLYMA_07G252900 | EntrezGene:100796260 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ProteinID:KRH50946 | ProteinID:KRH50946.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002338D9C |
| UniProt:I1KN49 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr7:+:43020609..43021587
Molecular Weight (calculated)
10394.8 Da
IEP (calculated)
10.808
GRAVY (calculated)
0.148
Length
91 amino acids
Sequence
(BLAST)
(BLAST)
1: MGSPTSRIVF RIVVVALLLL LLFYIGRPLY WKISATVHDI RNNKQTVRQG LSQIVIEAQK SVGWYHDESD SGVRANYRKL LLHKPISTVF A
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Arabidopsis Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.