Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc07g066170.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G18850.1 | Solyc07g066170.2.1 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400081724 | Potato | extracellular, golgi | 95.35 | 95.35 |
| VIT_05s0020g02180.t01 | Wine grape | extracellular, plasma membrane | 66.28 | 61.96 |
| KRH50946 | Soybean | endoplasmic reticulum | 59.3 | 56.04 |
| KRH02170 | Soybean | endoplasmic reticulum | 58.14 | 54.95 |
| CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 59.3 | 53.12 |
| Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 58.14 | 52.08 |
| CDX88909 | Canola | endoplasmic reticulum, plasma membrane | 58.14 | 52.08 |
| AT5G18850.1 | Thale cress | endoplasmic reticulum, golgi | 55.81 | 48.48 |
| Bra002190.1-P | Field mustard | extracellular, plasma membrane | 31.4 | 44.26 |
| CDX92577 | Canola | extracellular | 30.23 | 42.62 |
Protein Annotations
| EnsemblPlants:Solyc01g080590.2.1 | EnsemblPlantsGene:Solyc01g080590.2 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000276253F | UniProt:K4AXV3 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:79833183..79835124
Molecular Weight (calculated)
9611.9 Da
IEP (calculated)
10.630
GRAVY (calculated)
0.386
Length
86 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKMTFRVVI AILVVLLLYY VGRPLYWKIS ATVHDIRHNK QTVSGGFSQI VQAAQNSVSW FHDESDSGVL DVGIAAARRI VLRKVL
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Arabidopsis Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
SUBAcon: [golgi,endoplasmic reticulum]
SUBAcon: [golgi,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.