Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 81.82 | 84.38 |
| CDX88909 | Canola | endoplasmic reticulum, plasma membrane | 81.82 | 84.38 |
| Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 80.81 | 83.33 |
| Bra002190.1-P | Field mustard | extracellular, plasma membrane | 48.48 | 78.69 |
| CDX92577 | Canola | extracellular | 47.47 | 77.05 |
| KRH50946 | Soybean | endoplasmic reticulum | 56.57 | 61.54 |
| KRH02170 | Soybean | endoplasmic reticulum | 54.55 | 59.34 |
| PGSC0003DMT400081724 | Potato | extracellular, golgi | 50.51 | 58.14 |
| VIT_05s0020g02180.t01 | Wine grape | extracellular, plasma membrane | 52.53 | 56.52 |
| Solyc01g080590.2.1 | Tomato | extracellular, plasma membrane, vacuole | 48.48 | 55.81 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832003 | UniProt:A0A178UBS1 | ProteinID:AED92621.1 | ArrayExpress:AT5G18850 | EnsemblPlantsGene:AT5G18850 |
| RefSeq:AT5G18850 | TAIR:AT5G18850 | RefSeq:AT5G18850-TAIR-G | EnsemblPlants:AT5G18850.1 | TAIR:AT5G18850.1 | EMBL:BT012126 |
| EMBL:BT012379 | GO:GO:0005575 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_197386.1 |
| ProteinID:OAO91223.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | UniProt:Q6NLF5 | TMHMM:TMhelix | UniParc:UPI00001624E3 | : |
Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
Coordinates
chr5:+:6286732..6287629
Molecular Weight (calculated)
11296.5 Da
IEP (calculated)
10.619
GRAVY (calculated)
-0.253
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.