Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 5
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT5G18850.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g080590.2.1 | Tomato | extracellular, plasma membrane, vacuole | 61.96 | 66.28 |
PGSC0003DMT400081724 | Potato | extracellular, golgi | 60.87 | 65.12 |
KRH02170 | Soybean | endoplasmic reticulum | 59.78 | 60.44 |
KRH50946 | Soybean | endoplasmic reticulum | 59.78 | 60.44 |
Bra006482.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 58.7 | 56.25 |
CDX70853 | Canola | endoplasmic reticulum, plasma membrane | 58.7 | 56.25 |
CDX88909 | Canola | endoplasmic reticulum, plasma membrane | 58.7 | 56.25 |
AT5G18850.1 | Thale cress | endoplasmic reticulum, golgi | 56.52 | 52.53 |
Bra002190.1-P | Field mustard | extracellular, plasma membrane | 29.35 | 44.26 |
CDX92577 | Canola | extracellular | 29.35 | 44.26 |
Protein Annotations
EntrezGene:100256211 | wikigene:100256211 | MapMan:35.2 | EMBL:AM469745 | EMBL:AM471679 | ProteinID:CAN63802 |
ProteinID:CAN63802.1 | ProteinID:CAN63854 | ProteinID:CAN63854.1 | ProteinID:CBI26139 | ProteinID:CBI26139.3 | UniProt:D7T6L8 |
EMBL:FN595749 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100256211 | wikigene:LOC100256211 |
TIGR:TC55267 | TMHMM:TMhelix | UniParc:UPI00015C7E9A | ArrayExpress:VIT_05s0020g02180 | EnsemblPlantsGene:VIT_05s0020g02180 | EnsemblPlants:VIT_05s0020g02180.t01 |
RefSeq:XP_002278264 | RefSeq:XP_002278264.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:3916727..3917499
Molecular Weight (calculated)
10474.8 Da
IEP (calculated)
10.978
GRAVY (calculated)
0.038
Length
92 amino acids
Sequence
(BLAST)
(BLAST)
1: MATSTARVSF RVIVAILLIL LLFYVGRPLY WKISATVHEI RQNKQTVKQG ISQFVFEAQK SVGWFHDESD SGLREDRNAA AAANRKILRQ VL
1: MASPSSSPTT RIWFRTVILI ALMVVLFYVG RPLYWKISAT IHDIRHNKQS VREGISQIVH EAQRSVGWYH DESDSGFREG HNKKSGIAVS RRLLFAGDQ
Arabidopsis Description
At5g18850 [Source:UniProtKB/TrEMBL;Acc:Q6NLF5]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.