Factsheet for PGSC0003DMT400002255

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	golgi
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14360.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G14360.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G14360.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G14360.1	PGSC0003DMT400009054	AT5G66480.1	21798944
AT2G02810.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G02810.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g010650.2.1	Tomato	plasma membrane	99.15	70.27
PGSC0003DMT400065812	Potato	plasma membrane	89.41	63.55
AT1G14360.1	Thale cress	plasma membrane	88.56	63.14
Bra026835.1-P	Field mustard	plasma membrane	88.14	62.84
CDY33752	Canola	plasma membrane	88.14	62.84
Bra019657.1-P	Field mustard	plasma membrane	87.71	62.54
CDY49089	Canola	plasma membrane	87.71	62.54
CDY39320	Canola	plasma membrane	87.29	62.24
KRH74812	Soybean	plasma membrane	86.44	61.82
KRH69315	Soybean	plasma membrane	86.02	61.52
VIT_01s0026g01890.t01	Wine grape	extracellular	85.59	60.84
AT2G02810.1	Thale cress	plasma membrane	82.63	58.73
CDY41674	Canola	plasma membrane	82.63	58.73
GSMUA_AchrUn_...	Banana	plasma membrane	84.75	56.66
Bra026579.1-P	Field mustard	peroxisome	82.2	53.59
CDY09353	Canola	plasma membrane	82.63	53.42
TraesCS7B01G258500.1	Wheat	golgi, mitochondrion, plastid	76.69	50.7
HORVU7Hr1G085180.1	Barley	golgi, mitochondrion, plastid	76.27	50.42
TraesCS7D01G353100.1	Wheat	golgi, mitochondrion, plasma membrane	76.27	50.28
Os06t0593100-01	Rice	golgi, peroxisome, plasma membrane	75.85	50.0
TraesCS7A01G370000.1	Wheat	golgi, mitochondrion, plasma membrane	75.85	49.72
EER88586	Sorghum	mitochondrion	75.42	49.17
Zm00001d046467_P001	Maize	golgi, peroxisome, plasma membrane	75.0	49.03
Zm00001d036940_P003	Maize	cytosol, mitochondrion, plasma membrane	71.61	45.07
Zm00001d036936_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome	58.05	40.29
PGSC0003DMT400040212	Potato	plasma membrane	31.36	22.29
PGSC0003DMT400000002	Potato	plasma membrane	24.15	20.58
PGSC0003DMT400028218	Potato	peroxisome, plasma membrane, vacuole	17.37	17.08
PGSC0003DMT400058582	Potato	plasma membrane	24.58	16.57
GSMUA_Achr10P...	Banana	extracellular	8.47	14.39
PGSC0003DMT400000700	Potato	endoplasmic reticulum	2.12	6.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400002255	EnsemblPlantsGene:PGSC0003DMG400000862	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:UAA	PANTHER:PTHR10778	PANTHER:PTHR10778:SF10	PFAM:PF08449
PGSC:PGSC0003DMG400000862	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295FC83	UniProt:M0ZJU8	MapMan:24.2.1.1.5

Description

UDP-galactose transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400000862]

Coordinates

chr1:-:13369420..13375856

Molecular Weight (calculated)

26264.5 Da

IEP (calculated)

10.209

GRAVY (calculated)

0.293

Length

236 amino acids

Sequence
(BLAST)

001: MGIEALKYIS YPAQVLAKSS KMIPVMLIGA IVYGIRYTVP EYVCTLLVAG GVSMFALLKT SSKTISKLAH PNAPVGYGLC FLNLTFDGFT NATQDSINAR
101: YPKTSAWDIM LGMNLWGTIY NMIFMFGWSN ASGFEAVQFC KQHPEAAWDI LMYCLCGAVG QNFIFLTISR FGSLTNTTIT TTRKFVSIVV SSVLSGNPLS
201: TKQWTSVIMV FSGLSFQIYL KWRKLQRMPK KKKKSN

Best Arabidopsis Sequence Match ( AT1G14360.1 )
(BLAST)

001: MESHGSGLRR VLLLSFCVAG IWAAYIYQGI LQETLSTKKF GEDGKRFEHL AFLNLAQNVI CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TNAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFGG LSYQIYLKWR KLQRMQKKKK A

Arabidopsis Description

UTR3UDP-galactose/UDP-glucose transporter 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.