CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02810.1	CDX70995	AT5G22290.1	21798944
AT2G02810.1	CDX88803	AT5G22290.1	21798944
AT2G02810.1	CDX92368	AT5G22290.1	21798944
AT2G02810.1	CDY09128	AT5G22290.1	21798944
AT2G02810.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41674	Canola	plasma membrane	90.96	100.0
AT2G02810.1	Thale cress	plasma membrane	83.84	92.17
CDY33752	Canola	plasma membrane	80.27	88.52
CDY49089	Canola	plasma membrane	79.73	87.92
CDY39320	Canola	plasma membrane	79.45	87.61
KRH74812	Soybean	plasma membrane	75.34	83.33
KRH69315	Soybean	plasma membrane	75.07	83.03
PGSC0003DMT400002255	Potato	plastid	53.42	82.63
Bra026579.1-P	Field mustard	peroxisome	81.1	81.77
Solyc01g010650.2.1	Tomato	plasma membrane	74.25	81.38
PGSC0003DMT400065812	Potato	plasma membrane	73.97	81.33
VIT_01s0026g01890.t01	Wine grape	extracellular	73.7	81.02
Solyc05g007150.2.1	Tomato	plasma membrane	73.42	76.79
GSMUA_AchrUn_...	Banana	plasma membrane	72.6	75.07
CDX94506	Canola	extracellular	18.9	71.88
Os06t0593100-01	Rice	golgi, peroxisome, plasma membrane	67.67	68.99
Zm00001d046467_P001	Maize	golgi, peroxisome, plasma membrane	68.22	68.98
EER88586	Sorghum	mitochondrion	67.4	67.96
HORVU7Hr1G085180.1	Barley	golgi, mitochondrion, plastid	66.3	67.79
TraesCS7D01G353100.1	Wheat	golgi, mitochondrion, plasma membrane	66.3	67.6
TraesCS7B01G258500.1	Wheat	golgi, mitochondrion, plastid	66.03	67.51
TraesCS7A01G370000.1	Wheat	golgi, mitochondrion, plasma membrane	65.75	66.67
KRG99133	Soybean	extracellular	21.64	62.2
Zm00001d036940_P003	Maize	cytosol, mitochondrion, plasma membrane	63.29	61.6
GSMUA_Achr10P...	Banana	extracellular	22.74	59.71
Zm00001d036936_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome	52.05	55.88
CDX80234	Canola	plasma membrane	26.85	28.57
CDY66447	Canola	peroxisome	23.29	28.43
CDY60561	Canola	cytosol, peroxisome, plasma membrane	26.58	28.28
CDY49577	Canola	plasma membrane	26.3	27.99
CDX88721	Canola	cytosol, peroxisome, plasma membrane	26.58	25.26
CDX71077	Canola	cytosol	26.58	22.56
CDY70445	Canola	cytosol, peroxisome, plasma membrane	20.55	21.43
CDY58606	Canola	cytosol, peroxisome, plasma membrane	20.55	21.43
CDX94144	Canola	plasma membrane	20.27	20.56
PGSC0003DMT400000700	Potato	endoplasmic reticulum	4.38	20.51
CDX98783	Canola	plasma membrane	19.45	18.93
CDY41258	Canola	plasma membrane	20.0	18.25
CDY10844	Canola	plasma membrane	19.45	16.47

Protein Annotations

EnsemblPlants:CDY09353	EnsemblPlantsGene:GSBRNA2T00030814001	GO:A0A078FBP8	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:UAA	PANTHER:PTHR10778	PANTHER:PTHR10778:SF10
PFAM:PF08449	ProteinID:CDY09353	ProteinID:CDY09353.1	SEG:seg	SignalP:SignalP-TM	TMHMM:TMhelix
UniParc:UPI0004EEB7D6	UniProt:A0A078FBP8	MapMan:24.2.1.1.5	:	:	:

Description

BnaA02g26570DBnaA02g26570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FBP8]

Coordinates

chrLK031995:-:168939..171150

Molecular Weight (calculated)

40440.4 Da

IEP (calculated)

9.160

GRAVY (calculated)

0.248

Length

365 amino acids

Sequence
(BLAST)

001: MEANGSGFRR ILLLALCVSG IWSAYIYQGV LQETLSGGHA CGNLVWCGFE LGLLGSTERF DHPITDAWST KRFGPDEKRF EHLAFLNLAQ SVVCLVWSFI
101: MIKLWSNTGN GGAPWWTYWS AGITNTIGPA MGIEALKYIS YPAQVLAKSS KMIPVMLMGT LVYGIRYTFP EYICTFLVAG GVAVFALLKT SSKTISKLAH
201: PNAPLGYALC FLNLAFDGFT NATQDSIASR YPKTEAWDIM LGMNLWGTIY NMVYMFGLPQ GMGFEAYQFC KQHPEAAWDI LKYCLCGAVG QNFIFMTISN
301: FGSLANTTIT TTRKFVSIVV SSVMSGNPLS LKQWGCVSMV FGGLSYQIFL KWSKSKRVEK KKQKS

Best Arabidopsis Sequence Match ( AT2G02810.1 )
(BLAST)

001: MEVHGSGFRR ILLLALCISG IWSAYIYQGV LQETLSTKRF GPDEKRFEHL AFLNLAQSVV CLIWSYIMIK LWSNAGNGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGTLVY GIRYTFPEYM CTFLVAGGVS IFALLKTSSK TISKLAHPNA PLGYALCSLN LAFDGFTNAT QDSIASRYPK
201: TEAWDIMLGM NLWGTIYNMI YMFGLPQGIG FKAIQFCKLH PEAAWDILKY CICGAVGQNF IFMTISNFGS LANTTITTTR KFVSIVVSSV MSGNPLSLKQ
301: WGCVSMVFGG LAYQIYLKWK KLQRVEKKKQ KS

Arabidopsis Description

UTR1UDP-galactose/UDP-glucose transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:O64503]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.