Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 2
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60561 | Canola | cytosol, peroxisome, plasma membrane | 92.64 | 80.76 |
| CDX80234 | Canola | plasma membrane | 91.3 | 79.59 |
| CDY49577 | Canola | plasma membrane | 90.3 | 78.72 |
| AT5G59740.1 | Thale cress | plasma membrane | 89.3 | 77.62 |
| PGSC0003DMT400028218 | Potato | peroxisome, plasma membrane, vacuole | 60.87 | 75.83 |
| CDX88721 | Canola | cytosol, peroxisome, plasma membrane | 89.97 | 70.05 |
| PGSC0003DMT400040212 | Potato | plasma membrane | 76.25 | 68.67 |
| GSMUA_Achr6P33190_001 | Banana | extracellular | 32.44 | 67.83 |
| VIT_06s0004g04070.t01 | Wine grape | peroxisome, plasma membrane, vacuole | 77.93 | 67.73 |
| Solyc06g005290.2.1 | Tomato | peroxisome | 75.92 | 65.61 |
| Solyc11g073190.1.1 | Tomato | peroxisome, plasma membrane, vacuole | 66.22 | 65.56 |
| CDX71077 | Canola | cytosol | 89.3 | 62.09 |
| TraesCS1A01G044800.1 | Wheat | plasma membrane | 70.9 | 60.57 |
| TraesCS1D01G045400.1 | Wheat | plasma membrane | 70.57 | 60.29 |
| TraesCS1B01G058000.1 | Wheat | plasma membrane | 70.57 | 60.29 |
| HORVU1Hr1G008350.2 | Barley | plasma membrane | 70.57 | 60.29 |
| Zm00001d035601_P001 | Maize | plasma membrane | 69.9 | 59.89 |
| Os05t0115700-01 | Rice | endoplasmic reticulum, plastid, vacuole | 69.9 | 58.06 |
| EES17597 | Sorghum | peroxisome, plasma membrane, vacuole | 69.57 | 57.94 |
| Zm00001d011038_P002 | Maize | plasma membrane | 68.9 | 57.38 |
| CDX94506 | Canola | extracellular | 8.36 | 26.04 |
| CDY41674 | Canola | plasma membrane | 28.43 | 25.6 |
| CDY49089 | Canola | plasma membrane | 27.76 | 25.08 |
| CDY33752 | Canola | plasma membrane | 27.76 | 25.08 |
| CDY39320 | Canola | plasma membrane | 27.76 | 25.08 |
| CDY09353 | Canola | plasma membrane | 28.43 | 23.29 |
| CDY70445 | Canola | cytosol, peroxisome, plasma membrane | 22.41 | 19.14 |
| CDY58606 | Canola | cytosol, peroxisome, plasma membrane | 22.07 | 18.86 |
| CDX94144 | Canola | plasma membrane | 21.74 | 18.06 |
| CDX98783 | Canola | plasma membrane | 21.07 | 16.8 |
| CDY41258 | Canola | plasma membrane | 22.07 | 16.5 |
| CDY10844 | Canola | plasma membrane | 22.07 | 15.31 |
Protein Annotations
| EnsemblPlants:CDY66447 | EnsemblPlantsGene:GSBRNA2T00053634001 | GO:A0A078JM37 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:UAA | PANTHER:PTHR10778 | PANTHER:PTHR10778:SF13 |
| PFAM:PF08449 | ProteinID:CDY66447 | ProteinID:CDY66447.1 | TMHMM:TMhelix | UniParc:UPI0004EE68B2 | UniProt:A0A078JM37 |
| MapMan:24.2.1.1.5 | : | : | : | : | : |
Description
BnaCnng50890DBnaCnng50890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JM37]
Coordinates
chrLK035267:-:3793..5553
Molecular Weight (calculated)
33324.1 Da
IEP (calculated)
9.507
GRAVY (calculated)
0.371
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MAETETANGV KENKLWKGVF AVSGIMSTLV IYGVLQEKIM RVPYGLNKEF FKYSLFLVFC NRLTTSAVSA GALLASKKVL DPVAPVYKYC LISVTNILTT
101: TCQYEALKYV SFPVQTLAKC AKMIPVMVWG TLIMQKKYKG FDYLVAFLVT LGCSVFILFP AGDDVSPYNK GRENTVWGVS LMAGYLGFDG FTSTFQDKLF
201: KGYNMEIHNQ IFYTTLCSCV LSFIGLTLQG QLLLAVDFVS RHRDCLVDIA LLSTVATASQ FFISYTIRTF GALTFAAIMT TRQAKKQTRS QSLLNRLNN
101: TCQYEALKYV SFPVQTLAKC AKMIPVMVWG TLIMQKKYKG FDYLVAFLVT LGCSVFILFP AGDDVSPYNK GRENTVWGVS LMAGYLGFDG FTSTFQDKLF
201: KGYNMEIHNQ IFYTTLCSCV LSFIGLTLQG QLLLAVDFVS RHRDCLVDIA LLSTVATASQ FFISYTIRTF GALTFAAIMT TRQAKKQTRS QSLLNRLNN
001: MAEPDSVNEA KEKKKKLWKA VFAISGIMLT LVIYGLLQEK IMRVPYGLKK EYFKHSLFLV FCNRLTTSAV SAAALLASKK VLDPVAPVYK YCLISVTNIL
101: TTTCQYEALK YVSFPVQTLA KCAKMIPVMV WGTLIMQKKY RGFDYLVAFL VTLGCSVFIL FPAGDDISPY NKGRENTVWG VSLMVGYLGF DGFTSTFQDK
201: LFKGYNMEIH NQIFYTTICS SILSFTGLIL QGHLLPAVDF VSRHRDCLFD IALLSTVATA SQFFISYTIR TFGALTFAAI MTTRQLASIM LSCIWFSHPL
301: SWEQCIGSVI VFGSLYAKTF VKKKSEKPPA AQELPRDEEA QPLKGNP
101: TTTCQYEALK YVSFPVQTLA KCAKMIPVMV WGTLIMQKKY RGFDYLVAFL VTLGCSVFIL FPAGDDISPY NKGRENTVWG VSLMVGYLGF DGFTSTFQDK
201: LFKGYNMEIH NQIFYTTICS SILSFTGLIL QGHLLPAVDF VSRHRDCLFD IALLSTVATA SQFFISYTIR TFGALTFAAI MTTRQLASIM LSCIWFSHPL
301: SWEQCIGSVI VFGSLYAKTF VKKKSEKPPA AQELPRDEEA QPLKGNP
Arabidopsis Description
UTR5UTR5 [Source:UniProtKB/TrEMBL;Acc:A0A178V982]
SUBAcon: [plasma membrane,peroxisome,vacuole]
SUBAcon: [plasma membrane,peroxisome,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.