CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006695.1-P	Field mustard	cytosol, peroxisome, plasma membrane	80.47	95.96
CDY60561	Canola	cytosol, peroxisome, plasma membrane	83.59	93.59
CDX80234	Canola	plasma membrane	80.73	90.38
CDY66447	Canola	peroxisome	70.05	89.97
AT5G59740.1	Thale cress	plasma membrane	79.69	88.95
CDY49577	Canola	plasma membrane	78.65	88.05
CDX71077	Canola	cytosol	86.72	77.44
PGSC0003DMT400040212	Potato	plasma membrane	66.67	77.11
VIT_06s0004g04070.t01	Wine grape	peroxisome, plasma membrane, vacuole	69.01	77.03
PGSC0003DMT400028218	Potato	peroxisome, plasma membrane, vacuole	47.14	75.42
Solyc11g073190.1.1	Tomato	peroxisome, plasma membrane, vacuole	58.33	74.17
Solyc06g005290.2.1	Tomato	peroxisome	66.41	73.7
GSMUA_Achr6P33190_001	Banana	extracellular	25.52	68.53
TraesCS1A01G044800.1	Wheat	plasma membrane	61.46	67.43
TraesCS1D01G045400.1	Wheat	plasma membrane	61.2	67.14
HORVU1Hr1G008350.2	Barley	plasma membrane	60.94	66.86
Zm00001d035601_P001	Maize	plasma membrane	60.42	66.48
TraesCS1B01G058000.1	Wheat	plasma membrane	60.42	66.29
Os05t0115700-01	Rice	endoplasmic reticulum, plastid, vacuole	60.94	65.0
EES17597	Sorghum	peroxisome, plasma membrane, vacuole	60.42	64.62
Zm00001d011038_P002	Maize	plasma membrane	59.9	64.07
CDY41674	Canola	plasma membrane	25.26	29.22
CDY49089	Canola	plasma membrane	24.48	28.4
CDY39320	Canola	plasma membrane	24.48	28.4
CDY33752	Canola	plasma membrane	24.48	28.4
CDY09353	Canola	plasma membrane	25.26	26.58
CDX94506	Canola	extracellular	6.51	26.04
CDY58606	Canola	cytosol, peroxisome, plasma membrane	19.27	21.14
CDY70445	Canola	cytosol, peroxisome, plasma membrane	19.01	20.86
CDX94144	Canola	plasma membrane	19.01	20.28
CDY41258	Canola	plasma membrane	19.27	18.5
CDX98783	Canola	plasma membrane	17.97	18.4
CDY10844	Canola	plasma membrane	20.05	17.87

Protein Annotations

EnsemblPlants:CDX88721	EnsemblPlantsGene:GSBRNA2T00148773001	GO:A0A078DHJ5	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:UAA	PANTHER:PTHR10778	PANTHER:PTHR10778:SF13	PFAM:PF08449	ProteinID:CDX88721	ProteinID:CDX88721.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EE24D9	MapMan:24.2.1.1.5	:

Description

BnaA03g09280D

Coordinates

chrLK031856:-:668737..671945

Molecular Weight (calculated)

42829.8 Da

IEP (calculated)

9.458

GRAVY (calculated)

0.307

Length

384 amino acids

Sequence
(BLAST)

001: MPLSMESTRY SLVKGERIVR FIGRCIVSVR RVKRDGGWAM AETETVNGVK ESKLWKGVFA VSGIMSTLVI YGVLQEKIMR VPYGLNKEFF KYSLFLVFCN
101: RLTTSAVSAG ALLASKKVLD PVAPVYKYCL ISVTNILTTT CQYEALKYVS FPVQTLAKCA KMIPVMVWGT LIMQKKYKGF DYLVAFLVTL GCSVFILFPA
201: GDDISPYNKG RENTVWGVSL MAGYLGFDGF TSTFQDKLFK GYNMEIHNQI FYTTLCSCVL SFTGLVLQGH LLLAVDFVSR HRDCLLDIAL LSTVATASQF
301: FISYTIRTFG ALTFAAIMTT RQLASIMLSC IWFSHPLSWE QCIGSVIVFG SLYAKNLLNN NKKSQTQPPP PPELPQYGKP ESSS

Best Arabidopsis Sequence Match ( AT5G59740.1 )
(BLAST)

001: MAEPELVNGG VKENKLWKGV FAVSGIMSTL VIYGVLQEKI MRVPYGVNKE FFKHSLFLVF CNRLTTSAVS AGALLASKKV LDPVAPVYKY CLISVTNILT
101: TTCQYEALKY VSFPVQTLAK CAKMIPVMVW GTLIMQKKYK GFDYLVAFLV TLGCSVFILF PAGDDVSPYN KGRENTVWGV SLMAGYLGFD GFTSTFQDKL
201: FKGYNMEIHN QIFYTTLCSC VLSFTGLILQ GHLLPAVDFV SLHRDCLLDI ALLSTVATAS QFFISYTIRT FGALTFAAIM TTRQLASIML SCIWFSHPLS
301: WEQCIGSVIV FGSLYAKNLL NNKKNSQTQP PPPELPQYEK VESS

Arabidopsis Description

UTR5BUDP-galactose/UDP-glucose transporter 5B [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.