CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60561	Canola	cytosol, peroxisome, plasma membrane	92.13	92.13
CDY66447	Canola	peroxisome	79.59	91.3
CDY49577	Canola	plasma membrane	90.96	90.96
AT5G59740.1	Thale cress	plasma membrane	88.34	88.08
CDX88721	Canola	cytosol, peroxisome, plasma membrane	90.38	80.73
PGSC0003DMT400040212	Potato	plasma membrane	74.64	77.11
VIT_06s0004g04070.t01	Wine grape	peroxisome, plasma membrane, vacuole	76.97	76.74
PGSC0003DMT400028218	Potato	peroxisome, plasma membrane, vacuole	52.77	75.42
Solyc11g073190.1.1	Tomato	peroxisome, plasma membrane, vacuole	66.18	75.17
Solyc06g005290.2.1	Tomato	peroxisome	74.34	73.7
CDX71077	Canola	cytosol	89.5	71.4
TraesCS1A01G044800.1	Wheat	plasma membrane	68.51	67.14
HORVU1Hr1G008350.2	Barley	plasma membrane	68.51	67.14
TraesCS1D01G045400.1	Wheat	plasma membrane	68.22	66.86
Zm00001d035601_P001	Maize	plasma membrane	67.93	66.76
TraesCS1B01G058000.1	Wheat	plasma membrane	67.93	66.57
GSMUA_Achr6P33190_001	Banana	extracellular	27.7	66.43
Os05t0115700-01	Rice	endoplasmic reticulum, plastid, vacuole	67.93	64.72
EES17597	Sorghum	peroxisome, plasma membrane, vacuole	67.35	64.35
Zm00001d011038_P002	Maize	plasma membrane	66.76	63.79
CDY41674	Canola	plasma membrane	28.57	29.52
CDY33752	Canola	plasma membrane	27.99	29.0
CDY39320	Canola	plasma membrane	27.99	29.0
CDY49089	Canola	plasma membrane	27.99	29.0
CDY09353	Canola	plasma membrane	28.57	26.85
CDX94506	Canola	extracellular	7.29	26.04
CDY70445	Canola	cytosol, peroxisome, plasma membrane	21.87	21.43
CDY58606	Canola	cytosol, peroxisome, plasma membrane	20.99	20.57
CDX94144	Canola	plasma membrane	20.7	19.72
CDY41258	Canola	plasma membrane	21.57	18.5
CDX98783	Canola	plasma membrane	19.53	17.87
CDY10844	Canola	plasma membrane	20.99	16.71

Protein Annotations

EnsemblPlants:CDX80234	EnsemblPlantsGene:GSBRNA2T00133198001	GO:A0A078CW17	GO:GO:0006810	GO:GO:0008150	GO:GO:0055085
InterPro:UAA	PANTHER:PTHR10778	PANTHER:PTHR10778:SF13	PFAM:PF08449	ProteinID:CDX80234	ProteinID:CDX80234.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EAF873	MapMan:24.2.1.1.5	:

Description

BnaC09g35080D

Coordinates

chrLK031820:+:753136..755589

Molecular Weight (calculated)

38283.1 Da

IEP (calculated)

8.642

GRAVY (calculated)

0.386

Length

343 amino acids

Sequence
(BLAST)

001: MAEAETVNGV KEENKLWKGV FAVSGIMFTL VIYGLLQEKI MRVPYGLNKE FFKYSLFLVF CNRLTTSAVS AAALLASKKV LDPVAPVYKY CLISVTNILT
101: TTCQYEALKY VSFPVQTLAK CAKMIPVMVW GTLIMQKKYK GFDYLVAFLV TLGCSVFILF PAGEDISPYN KGRENTVWGV SLMAGYLGFD GFTSTFQDKL
201: FKGYNMEIHN QIFYTTLCSC VLSFTGLILQ GHLLLAVDFV SRHRDCLLDI ALLSTVATAS QFFISYTIRT FGALTFAAIM TTRQLASIML SCIWFSHPLS
301: WEQCIGSVIV FGSLYAKNLL NNKKSQSQPP PPELPQYEKA EGS

Best Arabidopsis Sequence Match ( AT5G59740.1 )
(BLAST)

001: MAEPELVNGG VKENKLWKGV FAVSGIMSTL VIYGVLQEKI MRVPYGVNKE FFKHSLFLVF CNRLTTSAVS AGALLASKKV LDPVAPVYKY CLISVTNILT
101: TTCQYEALKY VSFPVQTLAK CAKMIPVMVW GTLIMQKKYK GFDYLVAFLV TLGCSVFILF PAGDDVSPYN KGRENTVWGV SLMAGYLGFD GFTSTFQDKL
201: FKGYNMEIHN QIFYTTLCSC VLSFTGLILQ GHLLPAVDFV SLHRDCLLDI ALLSTVATAS QFFISYTIRT FGALTFAAIM TTRQLASIML SCIWFSHPLS
301: WEQCIGSVIV FGSLYAKNLL NNKKNSQTQP PPPELPQYEK VESS

Arabidopsis Description

UTR5BUDP-galactose/UDP-glucose transporter 5B [Source:UniProtKB/Swiss-Prot;Acc:Q6NMB6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.