CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX84933
CDX89063
CDX89333
CDX89999
CDX94330
CDY03907
CDY15210
CDY15212
CDY15214
CDY15215
CDY15722
CDY18608
CDY27605
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14360.1	CDX89999	AT1G01010.1	21798944
AT1G14360.1	CDY15210	AT1G01010.1	21798944
AT1G14360.1	CDY15212	AT1G01010.1	21798944
AT1G14360.1	CDY15214	AT1G01010.1	21798944
AT1G14360.1	CDY15215	AT1G01010.1	21798944
AT1G14360.1	CDX84933	AT1G27300.1	21798944
AT1G14360.1	CDY03907	AT1G27300.1	21798944
AT1G14360.1	CDY15722	AT1G27300.1	21798944
AT1G14360.1	CDY27605	AT1G27300.1	21798944
AT1G14360.1	CDX67837	AT3G60600.1	21798944
AT1G14360.1	CDX71796	AT3G60600.1	21798944
AT1G14360.1	CDX89063	AT3G60600.1	21798944
AT1G14360.1	CDY41153	AT3G60600.1	21798944
AT1G14360.1	CDY48365	AT3G60600.1	21798944
AT1G14360.1	CDX89333	AT4G26455.1	21798944
AT1G14360.1	CDX94330	AT4G26455.1	21798944
AT1G14360.1	CDY18608	AT5G66480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49089	Canola	plasma membrane	97.89	97.89
AT1G14360.1	Thale cress	plasma membrane	97.28	97.28
CDY33752	Canola	plasma membrane	96.68	96.68
KRH74812	Soybean	plasma membrane	87.61	87.88
CDY41674	Canola	plasma membrane	87.61	87.35
PGSC0003DMT400002255	Potato	plastid	62.24	87.29
KRH69315	Soybean	plasma membrane	87.01	87.27
Solyc01g010650.2.1	Tomato	plasma membrane	85.8	85.29
PGSC0003DMT400065812	Potato	plasma membrane	85.5	85.24
VIT_01s0026g01890.t01	Wine grape	extracellular	84.29	84.04
Solyc05g007150.2.1	Tomato	plasma membrane	84.29	79.94
CDY09353	Canola	plasma membrane	87.61	79.45
GSMUA_AchrUn_...	Banana	plasma membrane	82.48	77.34
Zm00001d046467_P001	Maize	golgi, peroxisome, plasma membrane	74.92	68.7
TraesCS7D01G353100.1	Wheat	golgi, mitochondrion, plasma membrane	74.02	68.44
HORVU7Hr1G085180.1	Barley	golgi, mitochondrion, plastid	73.72	68.35
EER88586	Sorghum	mitochondrion	74.62	68.23
TraesCS7B01G258500.1	Wheat	golgi, mitochondrion, plastid	73.41	68.07
Os06t0593100-01	Rice	golgi, peroxisome, plasma membrane	73.41	67.88
TraesCS7A01G370000.1	Wheat	golgi, mitochondrion, plasma membrane	73.11	67.22
KRG99133	Soybean	extracellular	25.68	66.93
CDX94506	Canola	extracellular	18.13	62.5
Zm00001d036940_P003	Maize	cytosol, mitochondrion, plasma membrane	70.69	62.4
GSMUA_Achr10P...	Banana	extracellular	25.98	61.87
Zm00001d036936_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome	57.4	55.88
CDX80234	Canola	plasma membrane	29.0	27.99
CDY66447	Canola	peroxisome	25.08	27.76
CDY60561	Canola	cytosol, peroxisome, plasma membrane	28.4	27.41
CDY49577	Canola	plasma membrane	28.4	27.41
CDX88721	Canola	cytosol, peroxisome, plasma membrane	28.4	24.48
CDX71077	Canola	cytosol	28.4	21.86
CDY70445	Canola	cytosol, peroxisome, plasma membrane	21.75	20.57
CDY58606	Canola	cytosol, peroxisome, plasma membrane	21.45	20.29
CDX94144	Canola	plasma membrane	21.45	19.72
CDX98783	Canola	plasma membrane	21.15	18.67
CDY41258	Canola	plasma membrane	21.45	17.75
PGSC0003DMT400000700	Potato	endoplasmic reticulum	3.93	16.67
CDY10844	Canola	plasma membrane	20.85	16.01

Protein Annotations

EnsemblPlants:CDY39320	EnsemblPlantsGene:GSBRNA2T00067738001	GO:A0A078HLI1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:UAA	PANTHER:PTHR10778	PANTHER:PTHR10778:SF10
PFAM:PF08449	ProteinID:CDY39320	ProteinID:CDY39320.1	TMHMM:TMhelix	UniParc:UPI0004EF0052	UniProt:A0A078HLI1
MapMan:24.2.1.1.5	:	:	:	:	:

Description

BnaC05g10590DBnaC05g10590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLI1]

Coordinates

chrLK032445:+:129846..131425

Molecular Weight (calculated)

36579.0 Da

IEP (calculated)

9.847

GRAVY (calculated)

0.272

Length

331 amino acids

Sequence
(BLAST)

001: MEAHGSGLRR VLLLSFCVAG IWTAYIYQGV LQETLSTKKF GEDGKRFEHL AFLNLAQNVV CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCLLN LAFDGFTNAT QDSVTARYPK
201: TNAWDIMLGM NLWGTIYNMV SMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFGG LSYQIYLKWR KLQRVQKKKK T

Best Arabidopsis Sequence Match ( AT1G14360.1 )
(BLAST)

001: MESHGSGLRR VLLLSFCVAG IWAAYIYQGI LQETLSTKKF GEDGKRFEHL AFLNLAQNVI CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TNAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFGG LSYQIYLKWR KLQRMQKKKK A

Arabidopsis Description

UTR3UDP-galactose/UDP-glucose transporter 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.