Factsheet for PGSC0003DMT400065812

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
golgi 6
plasma membrane 7
endoplasmic reticulum 6
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14360.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G14360.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G14360.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT1G14360.1	PGSC0003DMT400009054	AT5G66480.1	21798944
AT2G02810.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G02810.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g007150.2.1	Tomato	plasma membrane	95.78	91.12
PGSC0003DMT400002255	Potato	plastid	63.55	89.41
KRH74812	Soybean	plasma membrane	86.75	87.27
KRH69315	Soybean	plasma membrane	86.75	87.27
Bra026835.1-P	Field mustard	plasma membrane	86.14	86.4
CDY33752	Canola	plasma membrane	86.14	86.4
AT1G14360.1	Thale cress	plasma membrane	85.24	85.5
CDY39320	Canola	plasma membrane	85.24	85.5
Bra019657.1-P	Field mustard	plasma membrane	84.94	85.2
CDY49089	Canola	plasma membrane	84.94	85.2
VIT_01s0026g01890.t01	Wine grape	extracellular	84.94	84.94
CDY41674	Canola	plasma membrane	81.33	81.33
AT2G02810.1	Thale cress	plasma membrane	79.22	79.22
GSMUA_AchrUn_...	Banana	plasma membrane	81.63	76.77
CDY09353	Canola	plasma membrane	81.33	73.97
Os06t0593100-01	Rice	golgi, peroxisome, plasma membrane	73.8	68.44
TraesCS7D01G353100.1	Wheat	golgi, mitochondrion, plasma membrane	73.49	68.16
Zm00001d046467_P001	Maize	golgi, peroxisome, plasma membrane	74.1	68.14
HORVU7Hr1G085180.1	Barley	golgi, mitochondrion, plastid	73.19	68.07
TraesCS7B01G258500.1	Wheat	golgi, mitochondrion, plastid	72.89	67.79
TraesCS7A01G370000.1	Wheat	golgi, mitochondrion, plasma membrane	73.49	67.78
EER88586	Sorghum	mitochondrion	73.8	67.68
Bra026579.1-P	Field mustard	peroxisome	73.19	67.13
Zm00001d036940_P003	Maize	cytosol, mitochondrion, plasma membrane	70.18	62.13
GSMUA_Achr10P...	Banana	extracellular	25.3	60.43
Zm00001d036936_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome	57.23	55.88
PGSC0003DMT400040212	Potato	plasma membrane	30.12	30.12
PGSC0003DMT400028218	Potato	peroxisome, plasma membrane, vacuole	19.58	27.08
PGSC0003DMT400000002	Potato	plasma membrane	18.67	22.38
PGSC0003DMT400058582	Potato	plasma membrane	21.69	20.57
PGSC0003DMT400000700	Potato	endoplasmic reticulum	3.92	16.67

Protein Annotations

EntrezGene:102593867	MapMan:24.2.1.1.5	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	UniProt:M1CEL6	PFAM:PF08449	EnsemblPlantsGene:PGSC0003DMG400025616
PGSC:PGSC0003DMG400025616	EnsemblPlants:PGSC0003DMT400065812	PANTHER:PTHR10778	PANTHER:PTHR10778:SF10	TMHMM:TMhelix	InterPro:UAA
UniParc:UPI0000378521	RefSeq:XP_006363246.1	SEG:seg	:	:	:

Description

UDP-galactose transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400025616]

Coordinates

chr5:-:5771484..5776828

Molecular Weight (calculated)

37014.4 Da

IEP (calculated)

9.859

GRAVY (calculated)

0.250

Length

332 amino acids

Sequence
(BLAST)

001: MEAHGAGLRR VLVLAFCVAG IWSAYIYQGV LQETVSTKRF GPNNERFEHL AFLNLAQNVV CLVWSFIMLK IWSNGKSGGA PWWSYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMFMGTLVY GIRYTIPEYV CSLLVAGGVS LFALSKTSSK TISKLAHPNA PLGYGLCFLN LTFDGFTNAT QDSISARYPK
201: TSAWDIMFGM NLWGTIYNMM FMFGWPTASG YEAVQFCKEH PEAAWDILLY CLCGAVGQNF IFLTISRFGS LTNTTITTTR KFVSIVVSSV LSGNPLSEKQ
301: WTSVGMVFSG LSYQIYLKWR KLQRMTKKRK PM

Best Arabidopsis Sequence Match ( AT1G14360.1 )
(BLAST)

001: MESHGSGLRR VLLLSFCVAG IWAAYIYQGI LQETLSTKKF GEDGKRFEHL AFLNLAQNVI CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TNAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFGG LSYQIYLKWR KLQRMQKKKK A

Arabidopsis Description

UTR3UDP-galactose/UDP-glucose transporter 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.