Factsheet for VIT_01s0026g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_04s0023g02110.t01
VIT_06s0080g00970.t01
VIT_15s0048g00220.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14360.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G14360.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT1G14360.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944
AT1G14360.1	VIT_04s0023g02110.t01	AT5G66480.1	21798944
AT2G02810.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026835.1-P	Field mustard	plasma membrane	85.84	86.1
CDY33752	Canola	plasma membrane	85.84	86.1
PGSC0003DMT400002255	Potato	plastid	60.84	85.59
KRH74812	Soybean	plasma membrane	84.94	85.45
KRH69315	Soybean	plasma membrane	84.94	85.45
Bra019657.1-P	Field mustard	plasma membrane	84.94	85.2
CDY49089	Canola	plasma membrane	84.94	85.2
PGSC0003DMT400065812	Potato	plasma membrane	84.94	84.94
AT1G14360.1	Thale cress	plasma membrane	84.34	84.59
CDY39320	Canola	plasma membrane	84.04	84.29
Solyc01g010650.2.1	Tomato	plasma membrane	83.43	83.18
Solyc05g007150.2.1	Tomato	plasma membrane	86.45	82.23
CDY41674	Canola	plasma membrane	81.02	81.02
AT2G02810.1	Thale cress	plasma membrane	80.72	80.72
GSMUA_AchrUn_...	Banana	plasma membrane	81.93	77.05
CDY09353	Canola	plasma membrane	81.02	73.7
Zm00001d046467_P001	Maize	golgi, peroxisome, plasma membrane	75.9	69.81
HORVU7Hr1G085180.1	Barley	golgi, mitochondrion, plastid	74.7	69.47
TraesCS7D01G353100.1	Wheat	golgi, mitochondrion, plasma membrane	74.7	69.27
TraesCS7B01G258500.1	Wheat	golgi, mitochondrion, plastid	74.1	68.91
Os06t0593100-01	Rice	golgi, peroxisome, plasma membrane	74.1	68.72
TraesCS7A01G370000.1	Wheat	golgi, mitochondrion, plasma membrane	74.4	68.61
EER88586	Sorghum	mitochondrion	74.7	68.51
Bra026579.1-P	Field mustard	peroxisome	74.7	68.51
Zm00001d036940_P003	Maize	cytosol, mitochondrion, plasma membrane	71.69	63.47
GSMUA_Achr10P...	Banana	extracellular	26.2	62.59
Zm00001d036936_P002	Maize	endoplasmic reticulum, mitochondrion, peroxisome	57.83	56.47
VIT_06s0004g04070.t01	Wine grape	peroxisome, plasma membrane, vacuole	30.42	29.36
VIT_02s0025g04490.t01	Wine grape	plasma membrane	21.99	20.86
VIT_15s0048g01060.t01	Wine grape	plasma membrane	21.39	20.4

Protein Annotations

EntrezGene:100258453	wikigene:100258453	MapMan:24.2.1.1.5	ProteinID:CBI31994	ProteinID:CBI31994.3	UniProt:D7TNC1
EMBL:FN596002	GO:GO:0003674	GO:GO:0005215	GO:GO:0005459	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005794	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0030173	GO:GO:0030176	GO:GO:0055085	GO:GO:0072334
EntrezGene:LOC100258453	wikigene:LOC100258453	PFAM:PF08449	PANTHER:PTHR10778	PANTHER:PTHR10778:SF10	TIGR:TC65034
TMHMM:TMhelix	InterPro:UAA	UniParc:UPI0001982ADC	ArrayExpress:VIT_01s0026g01890	EnsemblPlantsGene:VIT_01s0026g01890	EnsemblPlants:VIT_01s0026g01890.t01
unigene:Vvi.4126	RefSeq:XP_002277178	RefSeq:XP_002277178.1	:	:	:

Description

No Description!

Coordinates

chr1:+:11250995..11256033

Molecular Weight (calculated)

37063.4 Da

IEP (calculated)

10.018

GRAVY (calculated)

0.263

Length

332 amino acids

Sequence
(BLAST)

001: MEAYGVGFRQ LSVLLFCVTG IWSAYIYQGV LQETVSTKRF GADQKRFEHL AFLNLAQNVV CLVWSFIMIK LWSRSSSGGA PWWSYWSAGI TNTIGPTMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTIPEYV CTLLVAGGVS SFALLKTSSK TISKLARPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TSAWDIMFGM NLWGTIYNMV YMFGWPHGSG FEAVQFCRQH PEAAWDIFLF CLCGAVGQNF IFLTISQFGS LTNTTITTTR KFVSIVVSSL LSGNPLSAKQ
301: WGSVSMVFSG LSYQIYLKWK RGQRLHKKRK PM

Best Arabidopsis Sequence Match ( AT1G14360.1 )
(BLAST)

001: MESHGSGLRR VLLLSFCVAG IWAAYIYQGI LQETLSTKKF GEDGKRFEHL AFLNLAQNVI CLVWSYIMIK LWSNGGSGGA PWWTYWSAGI TNTIGPAMGI
101: EALKYISYPA QVLAKSSKMI PVMLMGSLVY GIRYTLPEYL CTFLVAGGVS MFALLKTSSK TISKLAHPNA PLGYGLCFLN LAFDGFTNAT QDSITARYPK
201: TNAWDIMLGM NLWGTIYNMV YMFGLPHGSG FEAVQFCKQH PEAAWDILMY CLCGAVGQNF IFLTISRFGS LANTTITTTR KFVSIVVSSV LSGNPLSSKQ
301: WGCVSMVFGG LSYQIYLKWR KLQRMQKKKK A

Arabidopsis Description

UTR3UDP-galactose/UDP-glucose transporter 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.