Factsheet for PGSC0003DMT400078534

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400078534

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	PGSC0003DMT400078534	AT1G15080.1	21798944
AT1G15080.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G15080.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G15080.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT1G15080.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	87.31	93.69
KRH38169	Soybean	plasma membrane	68.73	73.51
AT1G15080.1	Thale cress	plasma membrane	65.94	73.45
KRH35882	Soybean	nucleus	69.97	70.19
VIT_01s0011g04180.t01	Wine grape	plasma membrane	69.66	70.09
KRG90909	Soybean	plasma membrane	69.35	69.57
Bra026782.1-P	Field mustard	plasma membrane	67.18	69.55
CDY33719	Canola	plasma membrane	66.87	69.23
CDX81695	Canola	plasma membrane	67.18	68.89
PGSC0003DMT400078535	Potato	plasma membrane	59.13	59.32
PGSC0003DMT400078418	Potato	plasma membrane	58.51	58.7
PGSC0003DMT400080717	Potato	plasma membrane	50.15	58.27
PGSC0003DMT400025204	Potato	extracellular	11.46	48.68
PGSC0003DMT400078582	Potato	mitochondrion	58.51	48.59
GSMUA_Achr6P01360_001	Banana	mitochondrion	35.91	32.4

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:102592199	MapMan:5.2.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	InterPro:LPP1/LPP2/LPP3_plant	UniProt:M1D0B5
PFAM:PF01569	EnsemblPlantsGene:PGSC0003DMG401030570	PGSC:PGSC0003DMG401030570	EnsemblPlants:PGSC0003DMT400078534	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI000294B11C
RefSeq:XP_006344178.1	RefSeq:XP_015162771.1	SEG:seg	:	:	:

Description

ER Phosphatidate Phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG401030570]

Coordinates

chr5:+:3536538..3543424

Molecular Weight (calculated)

36567.6 Da

IEP (calculated)

6.882

GRAVY (calculated)

0.198

Length

323 amino acids

Sequence
(BLAST)

001: MPEIQLGAHT FRNQGVEVAR FYMHDWLILF LLVVIDIVLN VIEPFHRFVG SDMMTDLRYP LKDNTIPFWA VPIIAIILPL LVILVFYFIR KDVYDVHQAI
101: LGLLYSVLIT SVLTDAIKDA VGRPRPDFFW RCFPDGKGVF DPITSNVKCT GLKSVIKEGH KSFPSGHSSW SFAGLGFLAW YLSGKIKLFD RRGHVAKLCL
201: VFLPLLMAAL VAVSRVDDYW HHWQDVFAGG LLGLTVASIC YLQFFPPPYD IDGRMPHVHL QRLAEQRTGT QSMSNNPGCL TIRQPEVDSM YVQPEHGIAV
301: SEHSAGETGP IFDDDVESGR WRH

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.