Factsheet for GSMUA_Achr6P01360_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P10230_001
GSMUA_Achr6P01360_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	GSMUA_Achr6P01360_001	AT1G15080.1	21798944
AT1G15080.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944
AT1G15080.1	GSMUA_Achr10P...	AT4G26455.1	21798944
AT1G15080.1	GSMUA_Achr3P04120_001	AT4G26455.1	21798944
AT1G15080.1	GSMUA_Achr4P01630_001	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025204	Potato	extracellular	11.17	52.63
GSMUA_Achr1P05420_001	Banana	cytosol, golgi, plasma membrane	37.99	42.9
GSMUA_Achr6P01340_001	Banana	endoplasmic reticulum, nucleus, peroxisome	42.46	42.7
GSMUA_Achr5P09970_001	Banana	plasma membrane	36.31	41.01
GSMUA_Achr3P01450_001	Banana	plasma membrane	35.47	40.06
AT1G15080.1	Thale cress	plasma membrane	31.01	38.28
KRH38169	Soybean	plasma membrane	32.12	38.08
Solyc04g025370.1.1	Tomato	endoplasmic reticulum	16.2	36.71
KRG90909	Soybean	plasma membrane	32.96	36.65
KRH35882	Soybean	nucleus	32.96	36.65
GSMUA_Achr8P18310_001	Banana	plasma membrane	31.01	36.39
CDY33719	Canola	plasma membrane	31.56	36.22
Bra026782.1-P	Field mustard	plasma membrane	31.56	36.22
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	29.33	36.08
PGSC0003DMT400080717	Potato	plasma membrane	27.93	35.97
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	32.4	35.91
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	30.17	35.88
CDX81695	Canola	plasma membrane	31.56	35.87
VIT_01s0011g04180.t01	Wine grape	plasma membrane	32.12	35.83
VIT_17s0000g03170.t01	Wine grape	plasma membrane	31.56	35.31
AT3G18220.1	Thale cress	plasma membrane	29.61	34.42
CDX92215	Canola	golgi	28.77	33.77
Bra022295.1-P	Field mustard	golgi	28.77	33.77
CDY24441	Canola	golgi	28.49	33.44
Solyc04g025400.2.1	Tomato	mitochondrion, plasma membrane	28.77	32.49
KRH30180	Soybean	endoplasmic reticulum	25.98	32.29
GSMUA_Achr10P...	Banana	plasma membrane	29.05	32.0
GSMUA_Achr2P22590_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	34.08	12.58

Protein Annotations

EnsemblPlants:GSMUA_Achr6P01360_001	EnsemblPlants:GSMUA_Achr6T01360_001	EnsemblPlantsGene:GSMUA_Achr6G01360_001	Gene3D:1.20.144.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR10165	PANTHER:PTHR10165:SF105	PFAM:PF01569
SEG:seg	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI000295E136	UniProt:M0T384	MapMan:5.2.2.1

Description

Putative Lipid phosphate phosphatase 2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G01360_001]

Coordinates

chr6:+:893036..898424

Molecular Weight (calculated)

40505.1 Da

IEP (calculated)

10.877

GRAVY (calculated)

-0.279

Length

358 amino acids

Sequence
(BLAST)

001: MNRGARRRRG RLWRCSTRAN DMRFDGWAHA WSHDSNLGNQ MLEPKNPING VAGNNCMPWS RGRRGLVRVR MRGDPMRRSS GQSGWPVTTV RRECNVGGKP
101: RPVRRMEGAT SPSFLHTGRV GSLARPLRRS SQMMWKGVFF VQRSPPFSIY IGIYVKRKNV YDLHNAVVGL LFSVLITVTV GVPSCGDMIE DKISPTIREN
201: LSILSRKILH SGPLQVLSGF LSWYLAGKLK AFDRRGHVAK LCIVFLPLLC ASLIAISRVD DYWHHWQDVF AGGFLGLVIA SFCYLQFFPP PYDVDGWFPH
301: AYLHAMADSR HNDQPTANPL QSRPSEMETV YVSSEGQDGI HLRDTILILN SMEAGRRQ

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.