CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX81695
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY33719

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	CDX81695	AT1G15080.1	21798944
AT1G15080.1	CDY33719	AT1G15080.1	21798944
AT1G15080.1	CDX78905	AT4G19030.1	21798944
AT1G15080.1	CDX98596	AT4G19030.1	21798944
AT1G15080.1	CDX99411	AT4G19030.1	21798944
AT1G15080.1	CDY01565	AT4G19030.1	21798944
AT1G15080.1	CDX89333	AT4G26455.1	21798944
AT1G15080.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026782.1-P	Field mustard	plasma membrane	99.36	99.36
CDX81695	Canola	plasma membrane	97.12	96.19
AT1G15080.1	Thale cress	plasma membrane	86.22	92.76
VIT_01s0011g04180.t01	Wine grape	plasma membrane	76.6	74.45
KRH38169	Soybean	plasma membrane	70.83	73.18
KRH35882	Soybean	nucleus	72.76	70.5
KRG90909	Soybean	plasma membrane	72.44	70.19
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	69.23	66.87
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	62.82	65.12
CDX92005	Canola	plasma membrane	60.58	58.88
CDX92215	Canola	golgi	56.41	57.7
CDY24441	Canola	golgi	56.09	57.38
CDX74243	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	58.97	57.32
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	55.13	54.43
CDY25943	Canola	plastid	55.77	53.87
CDY41071	Canola	plasma membrane	56.09	53.52
CDY43231	Canola	golgi, peroxisome, plasma membrane	61.54	53.04
CDY57538	Canola	golgi, plasma membrane, plastid	60.9	52.49
CDX94616	Canola	cytosol, golgi, nucleus	24.36	41.08
CDY57516	Canola	plasma membrane	25.0	38.81
GSMUA_Achr6P01360_001	Banana	mitochondrion	36.22	31.56

Protein Annotations

KEGG:00051+3.1.3.-	KEGG:00332+3.1.3.-	KEGG:00565+3.1.3.-	KEGG:00600+3.1.3.-	KEGG:00730+3.1.3.-	KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-	Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:A0A078H8A1	UniProt:A0A078H8A1	EnsemblPlants:CDY33719
ProteinID:CDY33719	ProteinID:CDY33719.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00055126001
InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase
SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0001CDD704	SEG:seg	:

Description

BnaA09g45250DBnaA09g45250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8A1]

Coordinates

chrLK032321:-:3409..5519

Molecular Weight (calculated)

35198.6 Da

IEP (calculated)

6.672

GRAVY (calculated)

0.236

Length

312 amino acids

Sequence
(BLAST)

001: MPEIQLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEVVLN VIEPFHRFVG EDMLTDLRYP LQDNTVPFWA VPLIAVVLPF VVISVYYFIR RDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGRGFF HNVTRDVLCT GDKDVVKEGH KSFPSGHTSW SFAGLGFLAL YLSGKIRVFD QRGHVAKLCI
201: VFLPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVASFC YLQFFPPPYD PDGWGPHAYF QMLADSRNVV QNSAGMNNLS VSQAELENVY VHQQGTSMEI
301: SRSNTRGTPQ EC

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.