CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57538	Canola	golgi, plasma membrane, plastid	96.96	96.96
CDX92005	Canola	plasma membrane	82.6	93.15
CDX74243	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	82.32	92.83
AT3G02600.1	Thale cress	plasma membrane	88.95	88.46
VIT_14s0006g02480.t01	Wine grape	plasma membrane	44.48	80.1
KRH01709	Soybean	mitochondrion	66.57	64.44
GSMUA_Achr8P18310_001	Banana	plasma membrane	53.04	62.95
CDY33719	Canola	plasma membrane	53.04	61.54
CDX81695	Canola	plasma membrane	53.04	60.95
OQU86360	Sorghum	plasma membrane	51.66	60.91
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	53.04	60.76
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	52.21	60.38
CDY25943	Canola	plastid	52.76	59.13
Solyc02g086370.2.1	Tomato	mitochondrion, plasma membrane	61.05	57.11
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	51.38	56.53
PGSC0003DMT400078582	Potato	mitochondrion	60.5	56.3
CDY41071	Canola	plasma membrane	50.83	56.27
Zm00001d008592_P003	Maize	plasma membrane	51.66	55.33
CDY24441	Canola	golgi	46.41	55.08
TraesCS3B01G060600.1	Wheat	peroxisome	50.0	55.02
CDX92215	Canola	golgi	46.13	54.75
HORVU3Hr1G008430.3	Barley	plastid	52.49	50.13
TraesCS3D01G051000.3	Wheat	plasma membrane	51.66	49.34
CDY57516	Canola	plasma membrane	24.86	44.78
CDX94616	Canola	cytosol, golgi, nucleus	17.4	34.05

Protein Annotations

KEGG:00051+3.1.3.-	KEGG:00332+3.1.3.-	KEGG:00565+3.1.3.-	KEGG:00600+3.1.3.-	KEGG:00730+3.1.3.-	KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-	Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:A0A078I081	UniProt:A0A078I081	EnsemblPlants:CDY43231
ProteinID:CDY43231	ProteinID:CDY43231.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00076258001
InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase
SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0004EEFECF	SEG:seg	:

Description

BnaC05g48240DBnaC05g48240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I081]

Coordinates

chrLK032550:+:10194..13303

Molecular Weight (calculated)

40530.1 Da

IEP (calculated)

6.611

GRAVY (calculated)

0.133

Length

362 amino acids

Sequence
(BLAST)

001: MPFPRFLNFG GLFQAVTNRE PEISVTADNW VSPSDIPLIE PFSKEHKMRE AQLGAHTVRS HGMTLARTHM HDWIILVLLV VLECILLIIH PFYRFVGKDM
101: MTDLSYPLKS NTVPIWSVPV YAMLLPLVIF ISIYFRRRDV YDLHHAVLGL LYSVLVTAVL TDSIKNAVGR PRPDFFWRCF PDGKAVYDTL GDVICHGDKS
201: VIREGHKSFP SGHTSWSFAG LGFLSLYLSG KIQAFDGKGH VAKLCIVILP LLVAALVGIS RVDDYWHHWQ DVFAGGLLGL VVSTFCYLQF FPPPYHTEAW
301: GPYAYFQVLE AARAQAQAAE NGVAQGGNGE EEDGGFMGLH LVDNPSMRRE EEDVEAGRVP RG

Best Arabidopsis Sequence Match ( AT3G02600.1 )
(BLAST)

001: MARFSFPCFP NFGGFNQAVT NRGPEISETA DNWVSPSDIP LIEPNSKEHR MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG
101: KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG
201: DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT
301: EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN PTMRREEDVE TGRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.