CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 1
golgi 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022295.1-P	Field mustard	golgi	99.34	99.34
CDX92215	Canola	golgi	99.34	99.34
AT3G18220.1	Thale cress	plasma membrane	84.92	84.09
PGSC0003DMT400080717	Potato	plasma membrane	55.08	60.43
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	56.39	59.11
Solyc04g025370.1.1	Tomato	endoplasmic reticulum	30.16	58.23
CDX81695	Canola	plasma membrane	58.69	56.83
PGSC0003DMT400025204	Potato	extracellular	14.1	56.58
CDY33719	Canola	plasma membrane	57.38	56.09
Solyc04g025400.2.1	Tomato	mitochondrion, plasma membrane	55.08	53.0
CDX92005	Canola	plasma membrane	55.41	52.65
CDX74243	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	55.08	52.34
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	54.1	52.22
VIT_17s0000g03170.t01	Wine grape	plasma membrane	54.75	52.19
CDY25943	Canola	plastid	53.11	50.15
CDY41071	Canola	plasma membrane	52.79	49.24
KRH30180	Soybean	endoplasmic reticulum	45.9	48.61
CDY57538	Canola	golgi, plasma membrane, plastid	55.41	46.69
CDY43231	Canola	golgi, peroxisome, plasma membrane	55.08	46.41
CDY57516	Canola	plasma membrane	24.92	37.81
CDX94616	Canola	cytosol, golgi, nucleus	19.67	32.43
GSMUA_Achr6P01360_001	Banana	mitochondrion	33.44	28.49

Protein Annotations

KEGG:00051+3.1.3.-	KEGG:00332+3.1.3.-	KEGG:00565+3.1.3.-	KEGG:00600+3.1.3.-	KEGG:00730+3.1.3.-	KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-	Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:A0A078GGE0	UniProt:A0A078GGE0	EnsemblPlants:CDY24441
ProteinID:CDY24441	ProteinID:CDY24441.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00026697001
PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF91	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014
SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0004EE20E8	SEG:seg	:	:

Description

BnaC05g35130DBnaC05g35130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGE0]

Coordinates

chrLK032159:+:86261..88004

Molecular Weight (calculated)

34706.2 Da

IEP (calculated)

8.370

GRAVY (calculated)

0.164

Length

305 amino acids

Sequence
(BLAST)

001: MGKITLGSHT VKSHGWKVAR EHLIDWIILV LLGIVIIVLN IMEPFHRYIG PDMLTDLTFP LYQDTIPIWA VPIICILVPI CIFTVYYYFG RDVYDLHHAI
101: LGIGFSCLVT GVTTDSIKNA VGRPRPNFFH RCFPDGKAKF DSVTKDVVCH GLKKIIKEGY KSFPSGHTSW SFAGLTFLAW YLSGKIKVFD RRGHVAKLCL
201: VFLPILVAVL IGITRVDDYW HHWTDVFAGA IIGIFFSSLS YLHFFPYPYD DNGWAPHAYF RMLAESSRRD TTMTRSGSRE MLENDVELGS TSMPHHRNRG
301: STDSE

Best Arabidopsis Sequence Match ( AT3G18220.1 )
(BLAST)

001: MAKIMLGSHS VKSHGWKVAR EHLCDWLILV VLGLIDIVLN VIEPFHRYIG PDMLTDLTFP FYEDTIPMWA VPIICILVPI CIFIVYYYYR RDVYDLHHAI
101: LGIGFSCLVT GVTTDSIKDA VGRPRPNFFY RCFPNGKPKF HPDTKDVVCH GVKKIIKEGY KSFPSGHTSW SFAGLTFLAW YLSGKIKVFD RRGHVAKLCL
201: VFLPILISIL IGISRVDDYW HHWTDVFAGA IIGIFVASFS YLHFFPYPYD ENGWAPHAYF RMLAERSTGR ATTMTRTGSR GMLGNDVEPG NSASSPHDRH
301: RESTDSDF

Arabidopsis Description

LPP4Probable lipid phosphate phosphatase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.