Factsheet for VIT_17s0000g03170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g02480.t01	Wine grape	plasma membrane	43.44	69.15
VIT_01s0011g04180.t01	Wine grape	plasma membrane	68.44	68.22
PGSC0003DMT400080717	Potato	plasma membrane	53.44	61.51
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	55.0	60.48
Solyc04g025370.1.1	Tomato	endoplasmic reticulum	29.69	60.13
PGSC0003DMT400025204	Potato	extracellular	13.75	57.89
AT3G18220.1	Thale cress	plasma membrane	54.69	56.82
Bra022295.1-P	Field mustard	golgi	52.5	55.08
CDX92215	Canola	golgi	52.5	55.08
CDY24441	Canola	golgi	52.19	54.75
Solyc04g025400.2.1	Tomato	mitochondrion, plasma membrane	53.44	53.94
KRH30180	Soybean	endoplasmic reticulum	46.25	51.39
VIT_01s0011g04170.t01	Wine grape	plasma membrane	60.31	38.14
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.56	37.24
GSMUA_Achr6P01360_001	Banana	mitochondrion	35.31	31.56

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100259341	wikigene:100259341	MapMan:5.2.2.1	ProteinID:CCB43244	ProteinID:CCB43244.1
UniProt:F6GTS0	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0008195	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311
GO:GO:0016787	EntrezGene:LOC100259341	wikigene:LOC100259341	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165
PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix
UniParc:UPI00015C9404	ArrayExpress:VIT_17s0000g03170	EnsemblPlantsGene:VIT_17s0000g03170	EnsemblPlants:VIT_17s0000g03170.t01	RefSeq:XP_002277246	RefSeq:XP_002277246.2
RefSeq:XP_010663642.1	RefSeq:XP_010663643.1	RefSeq:XP_019081916.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:3063849..3066518

Molecular Weight (calculated)

36082.1 Da

IEP (calculated)

8.384

GRAVY (calculated)

0.149

Length

320 amino acids

Sequence
(BLAST)

001: MQENQMGGHT IKSHGAKVAR IHMHDWLILI LLIVIDVILN LIEPFHRFVG EEMMIDLKYP MKDNTVPVWA VPIIAILLPF AAILANYFYR RNVYDLHHAT
101: LGLLYSVLIT GVITDAIKDA VGRPRPNFFW RCFPNGAALF DPLTKNVICH GDKGVIKEGH KSFPSGHTSW CFAGLSFLSW YLSGKIRAFD RKGHIAKLAI
201: VLLPLLMAAL VGVSRVDDYW HHWQDVFVGG LIGMTVASFC YLQCFPFPHV KDGWAPHAYF QVLAEGNHVQ SSSTRIPSLR LRQPEIEAAY MQPGFSREST
301: GNDCHSTSPI LDAMENGRRF

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.