Factsheet for VIT_01s0011g04160.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
cytosol 1
plastid 1
mitochondrion 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g04170.t01	Wine grape	plasma membrane	79.4	83.0
VIT_14s0006g02480.t01	Wine grape	plasma membrane	30.62	80.6
Solyc05g008810.2.1	Tomato	nucleus	43.29	71.12
PGSC0003DMT400078535	Potato	plasma membrane	43.29	71.12
Solyc05g008820.2.1	Tomato	plasma membrane	42.53	69.88
PGSC0003DMT400078418	Potato	plasma membrane	42.53	69.88
Bra024900.1-P	Field mustard	plasma membrane	36.86	67.01
KRH35886	Soybean	plasma membrane	42.53	66.77
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	42.72	66.28
Bra017464.1-P	Field mustard	plasma membrane	37.24	66.11
GSMUA_Achr8P18310_001	Banana	plasma membrane	37.81	65.57
VIT_01s0011g04180.t01	Wine grape	plasma membrane	38.94	64.17
CDY25943	Canola	plastid	38.94	63.78
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	37.62	62.97
OQU86360	Sorghum	plasma membrane	36.11	62.22
CDY41071	Canola	plasma membrane	38.37	62.08
VIT_17s0000g03170.t01	Wine grape	plasma membrane	37.24	61.56
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	36.11	61.02
AT2G01180.3	Thale cress	plasma membrane	37.81	60.61
Zm00001d008592_P003	Maize	plasma membrane	35.92	56.21
TraesCS3B01G060600.1	Wheat	peroxisome	34.4	55.32
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	34.4	55.32
HORVU3Hr1G008430.3	Barley	plastid	35.16	49.08
TraesCS3D01G051000.3	Wheat	plasma membrane	34.97	48.81
CDY57516	Canola	plasma membrane	18.34	48.26

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100242178	wikigene:100242178	EntrezGene:100254175	wikigene:100254175	MapMan:5.2.2.1
ProteinID:CCB50874	ProteinID:CCB50874.1	UniProt:F6HEU8	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	EntrezGene:LOC100242178	wikigene:LOC100242178	EntrezGene:LOC100254175
wikigene:LOC100254175	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf
InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0002109089	ArrayExpress:VIT_01s0011g04160
EnsemblPlantsGene:VIT_01s0011g04160	EnsemblPlants:VIT_01s0011g04160.t01	RefSeq:XP_002282839	RefSeq:XP_002282839.2	RefSeq:XP_002282847	RefSeq:XP_002282847.1
RefSeq:XP_003631216	RefSeq:XP_003631216.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:+:3776554..3783411

Molecular Weight (calculated)

59946.4 Da

IEP (calculated)

7.192

GRAVY (calculated)

-0.050

Length

529 amino acids

Sequence
(BLAST)

001: MERRVGVGCS QHEEAKMKVK GSSSDNSSKL SRRLDHRMHI LTLVPDSGSM AWRYPGSLFG SRWNFSSVFQ GTIREVEPGC HTIKSHGVQV ARDHKHDWLI
101: LLLLVMLEII LLVIHPFYRF VGKDMMDDLK YPLKDNTVPV WAVPIYAVLL PIVIFILFYL RRRDVYDLHH SILGLLFSVL ITAVITDAIK DAVGRPRPDF
201: FWRCFPDGKD VYDQWGDVIC HGKDSIIREG HKSFPSGHTS WSFAGLGFLS LYLSGKIQAF DRKGHVAKLC IVFLPLLAAS LVGVSRVDDY WHHWQDVFAG
301: GLLGLVVAFF CYLQFFPPPY DNNGSGPYAY FKMLEELRAN REAAHSVNVQ DAQGMEVVLP QQPSRNNKGF MPLSLDHDAT DSLDQMEDGR RFRAVCSSWG
401: LVASNARSQL FKPLSPMLLL PSNKDDEVHH LFDFSVNKAF WIPLPEVYGK WCCHSWNGWL VTITCSPPYP IEFFNPMSRA QIQLPLPETF QDPPADVDDA
501: PIESFIYKAI PSSTPSDPNC VTMKKVGIL

Best Arabidopsis Sequence Match ( AT3G02600.2 )
(BLAST)

001: MARFSFPCFP NFGGFNQHRM REAQLGGHTL RSHGMTVART HMHDWIILVL LVILECVLLI IHPFYRFVGK DMMTDLSYPL KSNTVPIWSV PVYAMLLPLV
101: IFIFIYFRRR DVYDLHHAVL GLLYSVLVTA VLTDAIKNAV GRPRPDFFWR CFPDGKALYD SLGDVICHGD KSVIREGHKS FPSGHTSWSF SGLGFLSLYL
201: SGKIQAFDGK GHVAKLCIVI LPLLFAALVG ISRVDDYWHH WQDVFAGGLL GLAISTICYL QFFPPPYHTE GWGPYAYFQV LEAARVQGAA NGAVQQPPPQ
301: VNNGEEEDGG FMGLHLVDNP TMRREEDVET GRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.