Factsheet for Solyc05g008810.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078535	Potato	plasma membrane	97.2	97.2
Solyc05g008820.2.1	Tomato	plasma membrane	86.02	86.02
Bra024900.1-P	Field mustard	plasma membrane	60.56	67.01
Bra017464.1-P	Field mustard	plasma membrane	60.25	65.1
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	67.08	63.34
KRH35886	Soybean	plasma membrane	66.15	63.2
CDY25943	Canola	plastid	63.35	63.16
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	61.8	62.97
GSMUA_Achr8P18310_001	Banana	plasma membrane	59.63	62.95
AT2G01180.3	Thale cress	plasma membrane	61.8	60.3
CDY41071	Canola	plasma membrane	61.18	60.24
OQU86360	Sorghum	plasma membrane	57.14	59.93
Solyc04g025370.1.1	Tomato	endoplasmic reticulum	29.19	59.49
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	55.9	57.51
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	52.8	56.48
Zm00001d008592_P003	Maize	plasma membrane	55.9	53.25
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	53.42	52.28
TraesCS3B01G060600.1	Wheat	peroxisome	53.11	51.98
Solyc02g086370.2.1	Tomato	mitochondrion, plasma membrane	62.42	51.94
Solyc04g025400.2.1	Tomato	mitochondrion, plasma membrane	50.93	51.73
CDY57516	Canola	plasma membrane	30.12	48.26
TraesCS3D01G051000.3	Wheat	plasma membrane	54.04	45.91
HORVU3Hr1G008430.3	Barley	plastid	53.11	45.12
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.12	43.29
VIT_01s0011g04170.t01	Wine grape	plasma membrane	67.39	42.89

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150
GO:GO:0008152	GO:GO:0008195	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311
GO:GO:0016787	UniProt:K4BX55	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	EnsemblPlantsGene:Solyc05g008810.2	EnsemblPlants:Solyc05g008810.2.1
TMHMM:TMhelix	UniParc:UPI0002766698	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:3043133..3047831

Molecular Weight (calculated)

36708.5 Da

IEP (calculated)

7.739

GRAVY (calculated)

0.003

Length

322 amino acids

Sequence
(BLAST)

001: MGWKDKIRTV FQGNTNEIEL GCGHTIKSHG SSVARIHMHD WLILLLLVVI EVVLYVIGPF HRYVGKDMMT DLKYPMKDNT VPVWSVPLYA VVLPIIIFIF
101: VYLRRRDIYD LHHSILGLLF AVLITAVITD AIKNGVGRPR PDFFWRCFPD GKDEYDQWGD VKCHGKASDI KEGHKSFPSG HTSWSFAGLG FLSLYLAGKI
201: KAFDRRGHVA KLCIVLLPLL MASLVGVSRV DDYWHHWQDV FTGGMIGLFV ATFCYLQFFP APYHTEGWGP YAYFRAVEEV RSSRPHVHPT NGGLETEHPE
301: VQLNQRTGTT PNPFEDVEYG RM

Best Arabidopsis Sequence Match ( AT3G02600.2 )
(BLAST)

001: MARFSFPCFP NFGGFNQHRM REAQLGGHTL RSHGMTVART HMHDWIILVL LVILECVLLI IHPFYRFVGK DMMTDLSYPL KSNTVPIWSV PVYAMLLPLV
101: IFIFIYFRRR DVYDLHHAVL GLLYSVLVTA VLTDAIKNAV GRPRPDFFWR CFPDGKALYD SLGDVICHGD KSVIREGHKS FPSGHTSWSF SGLGFLSLYL
201: SGKIQAFDGK GHVAKLCIVI LPLLFAALVG ISRVDDYWHH WQDVFAGGLL GLAISTICYL QFFPPPYHTE GWGPYAYFQV LEAARVQGAA NGAVQQPPPQ
301: VNNGEEEDGG FMGLHLVDNP TMRREEDVET GRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.