CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plasma membrane, peroxisome

Predictor Summary:

nucleus 1
mitochondrion 3
endoplasmic reticulum 1
plastid 1
plasma membrane 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35886	Soybean	plasma membrane	92.08	93.18
PGSC0003DMT400078535	Potato	plasma membrane	63.64	67.39
Solyc05g008810.2.1	Tomato	nucleus	63.34	67.08
Bra024900.1-P	Field mustard	plasma membrane	57.18	67.01
PGSC0003DMT400078418	Potato	plasma membrane	62.17	65.84
Bra017464.1-P	Field mustard	plasma membrane	57.48	65.77
Solyc05g008820.2.1	Tomato	plasma membrane	61.88	65.53
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	58.65	63.29
CDY25943	Canola	plastid	59.82	63.16
AT2G01180.3	Thale cress	plasma membrane	59.24	61.21
GSMUA_Achr8P18310_001	Banana	plasma membrane	54.55	60.98
CDY41071	Canola	plasma membrane	58.36	60.86
KRH38169	Soybean	plasma membrane	53.08	59.93
KRH35882	Soybean	nucleus	54.84	58.07
KRH01709	Soybean	mitochondrion	63.64	58.02
OQU86360	Sorghum	plasma membrane	52.2	57.98
KRG90909	Soybean	plasma membrane	54.25	57.45
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	46.63	54.64
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	50.15	54.63
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	52.49	54.41
TraesCS3B01G060600.1	Wheat	peroxisome	51.91	53.8
Zm00001d008592_P003	Maize	plasma membrane	51.32	51.78
CDY57516	Canola	plasma membrane	29.33	49.75
TraesCS3D01G051000.3	Wheat	plasma membrane	53.08	47.76
HORVU3Hr1G008430.3	Barley	plastid	52.49	47.23
KRH30180	Soybean	endoplasmic reticulum	39.88	47.22
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	66.28	42.72
VIT_01s0011g04170.t01	Wine grape	plasma membrane	62.76	42.29
KRH45276	Soybean	extracellular	14.66	37.04

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100784929	MapMan:5.2.2.1	EMBL:ACUP02012652	EMBL:BT095632	UniProt:C6TDH4
EnsemblPlantsGene:GLYMA_20G121200	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0008195	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787
ProteinID:KRG90907.1	EnsemblPlants:KRG90908	ProteinID:KRG90908	ProteinID:KRG90908.1	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569
PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317
TMHMM:TMhelix	UniParc:UPI0001B15B58	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:36382768..36389717

Molecular Weight (calculated)

38975.2 Da

IEP (calculated)

8.450

GRAVY (calculated)

-0.019

Length

341 amino acids

Sequence
(BLAST)

001: MEPVSRANFF SFQRFWLPFQ GQGGMRQQVD PSAHTIKSHG ASLARKHARD WLILLLLIVI EIVLFVIHPF KRFVGRDMME DLRYPMKENT VPVWAVPLYA
101: VLLPMAVFLL FYMRRRDVYD LHHSVLGLLF AVLITGVFTD AIKNAVGRPR PDFYWRCFPD GVENYDSWGG VVCHGNASDI KEGHKSFPSG HTSWSFAGLG
201: FLSLYLSGKI KAFDRKGHVA KLCIVFLPLL VACLVAISRV DDYWHHWQDV FAGGILGLVV ATFCYMQFFP APYNDEGWGP YAYFRAMEES RANANINREL
301: PVGQAMEDRV TNQEPRRNGD TTFTPYSYRS PTLEAMEMGQ K

Best Arabidopsis Sequence Match ( AT2G01180.8 )
(BLAST)

001: MTIGSFFSSL LFWRNSQDQE AQRGRMQEID LSVHTIKSHG GRVASKHKHD WIILVILIAI EIGLNLISPF YRYVGKDMMT DLKYPFKDNT VPIWSVPVYA
101: VLLPIIVFVC FYLKRTCVYD LHHSILGLLF AVLITGVITD SIKVATGRPR PNFYWRCFPD GKELYDALGG VVCHGKAAEV KEGHKSFPSG HTSWSFAGLT
201: FLSLYLSGKI KAFNNEGHVA KLCLVIFPLL AACLVGISRV DDYWHHWQDV FAGALIGTLV AAFCYRQFYP NPYHEEGWGP YAYFKAAQER GVPVTSSQNG
301: DALRAMSLQM DSTSLENMES GTSTAPR

Arabidopsis Description

ATPAP1phosphatidic acid phosphatase 1 [Source:TAIR;Acc:AT2G01180]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.