CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 1
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90909
KRH11076
KRH21197
KRH35882
KRH38169
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	KRG90909	AT1G15080.1	21798944
AT1G15080.1	KRH35882	AT1G15080.1	21798944
AT1G15080.1	KRH38169	AT1G15080.1	21798944
AT1G15080.1	KRH11076	AT4G19030.1	21798944
AT1G15080.1	KRH21197	AT4G19030.1	21798944
AT1G15080.1	KRH42923	AT4G19030.1	21798944
AT1G15080.1	KRH42926	AT4G19030.1	21798944
AT1G15080.1	KRH45251	AT4G19030.1	21798944
AT1G15080.1	KRH59035	AT4G19030.1	21798944
AT1G15080.1	KRH59036	AT4G19030.1	21798944
AT1G15080.1	KRH56393	AT4G26455.1	21798944
AT1G15080.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35882	Soybean	nucleus	97.83	97.83
KRH38169	Soybean	plasma membrane	77.02	82.12
AT1G15080.1	Thale cress	plasma membrane	68.32	75.86
VIT_01s0011g04180.t01	Wine grape	plasma membrane	72.98	73.21
Bra026782.1-P	Field mustard	plasma membrane	70.19	72.44
CDY33719	Canola	plasma membrane	70.19	72.44
CDX81695	Canola	plasma membrane	70.81	72.38
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	69.57	69.35
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	63.04	67.44
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	51.86	57.39
KRH35886	Soybean	plasma membrane	57.14	54.6
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	57.45	54.25
KRH01709	Soybean	mitochondrion	62.42	53.74
KRH30180	Soybean	endoplasmic reticulum	41.93	46.88
KRH45276	Soybean	extracellular	16.15	38.52
GSMUA_Achr6P01360_001	Banana	mitochondrion	36.65	32.96

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100785459	MapMan:5.2.2.1	EMBL:ACUP02012652	EnsemblPlantsGene:GLYMA_20G121300	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	UniProt:I1NFQ2	EnsemblPlants:KRG90909
ProteinID:KRG90909	ProteinID:KRG90909.1	ProteinID:KRG90910.1	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165
PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix
UniParc:UPI00001A4915	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:36394102..36399405

Molecular Weight (calculated)

36296.2 Da

IEP (calculated)

7.520

GRAVY (calculated)

0.212

Length

322 amino acids

Sequence
(BLAST)

001: MPEIQLGMHT IRSHGTRVAR THMHDWLILL LLVIIDAVLN LIQPFHRFVG EGMMTDLRYP LKANTIPFWA VPIIAILLPL AVFLVYYFIR KDVYDLHHAI
101: MGLLFSVLIT AVMTDAIKDA VGRPRPDFFW RCFPDGKGVF DPVTSNVLCT GDKGVIKEGH KSFPSGHTSW SFAGLVYLAW YLSGKLRAFD RRGHVAKLCL
201: VFLPILVAAM IAVSRVDDYW HHWQDVFAGA LIGMIIASFC YLQFFPPPYD VDGWGPHAYF QMLAESRNGA QPSTVNNEIH HVQSAELQAV SLYIPPQHDA
301: DTRGNSWDSS PMLGASQNVR TH

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.