Factsheet for Solyc05g008800.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

nucleus 2
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	golgi, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g008800.2.1
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	Solyc05g008800.2.1	AT1G15080.1	21798944
AT1G15080.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G15080.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G15080.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	93.69	87.31
KRH38169	Soybean	plasma membrane	67.44	67.22
AT1G15080.1	Thale cress	plasma membrane	64.45	66.9
VIT_01s0011g04180.t01	Wine grape	plasma membrane	68.77	64.49
KRH35882	Soybean	nucleus	68.11	63.66
Bra026782.1-P	Field mustard	plasma membrane	65.45	63.14
KRG90909	Soybean	plasma membrane	67.44	63.04
CDY33719	Canola	plasma membrane	65.12	62.82
CDX81695	Canola	plasma membrane	65.45	62.54
Solyc04g025370.1.1	Tomato	endoplasmic reticulum	29.9	56.96
Solyc05g008820.2.1	Tomato	plasma membrane	57.14	53.42
Solyc05g008810.2.1	Tomato	nucleus	56.48	52.8
Solyc04g025400.2.1	Tomato	mitochondrion, plasma membrane	48.84	46.37
Solyc02g086370.2.1	Tomato	mitochondrion, plasma membrane	58.14	45.22
GSMUA_Achr6P01360_001	Banana	mitochondrion	35.88	30.17

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	UniProt:K4BX54	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569
PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317
EnsemblPlantsGene:Solyc05g008800.2	EnsemblPlants:Solyc05g008800.2.1	TMHMM:TMhelix	UniParc:UPI0002766697	SEG:seg	:

Description

Lipid phosphate phosphatase 2 [Source:Projected from Arabidopsis thaliana (AT1G15080) UniProtKB/Swiss-Prot;Acc:Q9XI60]

Coordinates

chr5:-:3036036..3039708

Molecular Weight (calculated)

34107.4 Da

IEP (calculated)

7.038

GRAVY (calculated)

0.201

Length

301 amino acids

Sequence
(BLAST)

001: MHDWFILFVL VVIDIILNVI EPFHRFVGSD MMTDLSYPLK DNTIPFWAVP IIAIVLPLLV ILVFYFIRKD VYDVHQAILG LLYSVLISSV LTDAIKDAVG
101: RPRPDFFWRC FPDGKGVFDP ITSNVKCTGL KSVIKEGHKS FPSGHSSWSF AGLGFLAWYL SGKIKVFDQR GHVAKLCLVF LPLLMAALVA VSRVDDYWHH
201: WQDVFAGGLL GLTVASICYL QFFPPPYDID GRMPHVHLQR LAEQRTGSQS TSNNPGRLTI RQPVADSMYV QSEHSIAVSE HSAHETRPIF DDDLENGRWR
301: H

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.