Factsheet for VIT_01s0011g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04180.t01
VIT_10s0003g01830.t01
VIT_19s0015g01790.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	VIT_01s0011g04180.t01	AT1G15080.1	21798944
AT1G15080.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT1G15080.1	VIT_19s0015g01790.t01	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G15080.1	Thale cress	plasma membrane	72.27	80.0
Bra026782.1-P	Field mustard	plasma membrane	74.45	76.6
CDY33719	Canola	plasma membrane	74.45	76.6
CDX81695	Canola	plasma membrane	74.77	76.19
KRH38169	Soybean	plasma membrane	70.41	74.83
KRH35882	Soybean	nucleus	73.52	73.29
KRG90909	Soybean	plasma membrane	73.21	72.98
VIT_14s0006g02480.t01	Wine grape	plasma membrane	44.86	71.64
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	70.09	69.66
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	64.49	68.77
VIT_17s0000g03170.t01	Wine grape	plasma membrane	68.22	68.44
VIT_01s0011g04170.t01	Wine grape	plasma membrane	62.93	39.92
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	64.17	38.94
GSMUA_Achr6P01360_001	Banana	mitochondrion	35.83	32.12

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100259291	wikigene:100259291	MapMan:5.2.2.1	ProteinID:CBI26964	ProteinID:CBI26964.3
UniProt:D7T8Z3	EMBL:FN595752	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	EntrezGene:LOC100259291	wikigene:LOC100259291	InterPro:LPP1/LPP2/LPP3_plant
PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014
SUPFAM:SSF48317	TIGR:TC69699	TMHMM:TMhelix	UniParc:UPI00015C8217	ArrayExpress:VIT_01s0011g04180	EnsemblPlantsGene:VIT_01s0011g04180
EnsemblPlants:VIT_01s0011g04180.t01	unigene:Vvi.15209	RefSeq:XP_002282854	RefSeq:XP_002282854.1	RefSeq:XP_019074569.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:3798733..3803625

Molecular Weight (calculated)

35989.8 Da

IEP (calculated)

7.106

GRAVY (calculated)

0.278

Length

321 amino acids

Sequence
(BLAST)

001: MPEIQLGAHT IRSHGLKVAR SHMHDWLILI LLVVIEVILN VIEPFHRFVG KEMLTDLSYP LQTNTIPFWS VPLIAILLPI VVILVYYFIR QDVYDLHHAI
101: LGLLFSVLIT AVITDAIKDA VGRPRPDFFW RCFPNGKGVF DTRTTDVLCT GDKSVIKEGH KSFPSGHTSW SFAGLSFLSW YLSGKIRAFD RKGHVAKLCI
201: VFLPILLAAL VGVSRVDDYW HHWQDVFAGG VIGATVASFC YLQFFPPPYD IDGWGPHAYF EMLAESRNGI QSSTTGINHL SMGVTELQSI HVESHLGMDT
301: SVVYTRDTSP ILDGLNSGRR N

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.