CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 1
extracellular 1
golgi 1
plasma membrane 3
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90909
KRH11076
KRH21197
KRH35882
KRH38169
KRH42923
KRH42926
KRH45251
KRH56393
KRH59035
KRH59036
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	KRG90909	AT1G15080.1	21798944
AT1G15080.1	KRH35882	AT1G15080.1	21798944
AT1G15080.1	KRH38169	AT1G15080.1	21798944
AT1G15080.1	KRH11076	AT4G19030.1	21798944
AT1G15080.1	KRH21197	AT4G19030.1	21798944
AT1G15080.1	KRH42923	AT4G19030.1	21798944
AT1G15080.1	KRH42926	AT4G19030.1	21798944
AT1G15080.1	KRH45251	AT4G19030.1	21798944
AT1G15080.1	KRH59035	AT4G19030.1	21798944
AT1G15080.1	KRH59036	AT4G19030.1	21798944
AT1G15080.1	KRH56393	AT4G26455.1	21798944
AT1G15080.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90909	Soybean	plasma membrane	97.83	97.83
KRH38169	Soybean	plasma membrane	77.02	82.12
AT1G15080.1	Thale cress	plasma membrane	68.63	76.21
VIT_01s0011g04180.t01	Wine grape	plasma membrane	73.29	73.52
Bra026782.1-P	Field mustard	plasma membrane	70.5	72.76
CDY33719	Canola	plasma membrane	70.5	72.76
CDX81695	Canola	plasma membrane	71.12	72.7
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	70.19	69.97
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	63.66	68.11
KRG98223	Soybean	endoplasmic reticulum, extracellular, plasma membrane	52.17	57.73
KRH35886	Soybean	plasma membrane	57.76	55.19
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	58.07	54.84
KRH01709	Soybean	mitochondrion	62.73	54.01
KRH30180	Soybean	endoplasmic reticulum	42.24	47.22
KRH45276	Soybean	extracellular	16.46	39.26
GSMUA_Achr6P01360_001	Banana	mitochondrion	36.65	32.96

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:100805924	MapMan:5.2.2.1	EMBL:ACUP02006705	EMBL:BT099497	UniProt:C6TP11
EnsemblPlantsGene:GLYMA_10G270000	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0008195	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787
EnsemblPlants:KRH35882	ProteinID:KRH35882	ProteinID:KRH35882.1	ProteinID:KRH35883.1	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569
PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317
TMHMM:TMhelix	UniParc:UPI0001B17183	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:49221523..49226980

Molecular Weight (calculated)

36294.2 Da

IEP (calculated)

7.520

GRAVY (calculated)

0.239

Length

322 amino acids

Sequence
(BLAST)

001: MPEIQLGMHT IRSHGTRVAR IHMHDWLILL LLVIIDAVLN IIQPFHRFVG EGMMTDLRYP LKANTIPFWA VPIIAILLPL AVFLVYYFIR KDVYDLHHAI
101: LGLLFSVLIT AVMTDAIKDA VGRPRPDFFW RCFPDGKGVF DPVTSNVLCT GDKGVIKEGH KSFPSGHTSW SFAGLVYLAW YLSGKLRAFD RRGHVAKLCL
201: VFLPFLVAAM IAVSRVDDYW HHWQDVFAGA LIGMVIASFC YLQFFPPPYD IDGWGPHAYF QMLAESRNGA QPSTVNNEIH HVQSAELQAV SLYIPPQHDA
301: DTRGNSWDSS PMLGASQNVR AH

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.