CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX81695
CDX89333
CDX94330
CDX98596
CDX99411
CDY01565
CDY33719

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15080.1	CDX81695	AT1G15080.1	21798944
AT1G15080.1	CDY33719	AT1G15080.1	21798944
AT1G15080.1	CDX78905	AT4G19030.1	21798944
AT1G15080.1	CDX98596	AT4G19030.1	21798944
AT1G15080.1	CDX99411	AT4G19030.1	21798944
AT1G15080.1	CDY01565	AT4G19030.1	21798944
AT1G15080.1	CDX89333	AT4G26455.1	21798944
AT1G15080.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33719	Canola	plasma membrane	96.19	97.12
AT1G15080.1	Thale cress	plasma membrane	85.4	92.76
VIT_01s0011g04180.t01	Wine grape	plasma membrane	76.19	74.77
KRH38169	Soybean	plasma membrane	70.16	73.18
KRH35882	Soybean	nucleus	72.7	71.12
KRG90909	Soybean	plasma membrane	72.38	70.81
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	68.89	67.18
Solyc05g008800.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	62.54	65.45
CDX92005	Canola	plasma membrane	60.63	59.5
CDX92215	Canola	golgi	57.14	59.02
CDY24441	Canola	golgi	56.83	58.69
CDX74243	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	59.05	57.94
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	55.56	55.38
CDY25943	Canola	plastid	56.19	54.8
CDY41071	Canola	plasma membrane	56.51	54.43
CDY43231	Canola	golgi, peroxisome, plasma membrane	60.95	53.04
CDY57538	Canola	golgi, plasma membrane, plastid	60.63	52.76
CDX94616	Canola	cytosol, golgi, nucleus	24.13	41.08
CDY57516	Canola	plasma membrane	25.4	39.8
GSMUA_Achr6P01360_001	Banana	mitochondrion	35.87	31.56

Protein Annotations

KEGG:00051+3.1.3.-	KEGG:00332+3.1.3.-	KEGG:00565+3.1.3.-	KEGG:00600+3.1.3.-	KEGG:00730+3.1.3.-	KEGG:00740+3.1.3.-
KEGG:00760+3.1.3.-	Gene3D:1.20.144.10	MapMan:5.2.2.1	GO:A0A078CXY7	EnsemblPlants:CDX81695	ProteinID:CDX81695
ProteinID:CDX81695.1	EnsemblPlantsGene:GSBRNA2T00136618001	InterPro:LPP1/LPP2/LPP3_plant	PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0004EC8443
SEG:seg	:	:	:	:	:

Description

BnaC08g39060D

Coordinates

chrLK031826:+:390814..392950

Molecular Weight (calculated)

35609.0 Da

IEP (calculated)

6.624

GRAVY (calculated)

0.210

Length

315 amino acids

Sequence
(BLAST)

001: MPEIQLGAHT IRSHGVTVAR FHMHDWLILV LLIVIEVVLN VIEPFHRFVG EDMLTDLRYP LQDNTVPFWA VPLIALVLPF AVISVYYFIR RDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGRGFF HNVTRDVLCT GDKDVVKEGH KSFPSGHTSW SFAGLGFLAL YLSGKIRVFD QRGHVAKLCI
201: VFLPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVASFC YLQFFPPPYD PDGWGPHAYF QMLADSRNVV QNSAGMNNLS VRQAELENVY VDQQGTSMEI
301: SRSNTRDTTR TLESC

Best Arabidopsis Sequence Match ( AT1G15080.1 )
(BLAST)

001: MPEIHLGAHT IRSHGVTVAR FHMHDWLILL LLIVIEIVLN VIEPFHRFVG EDMLTDLRYP LQDNTIPFWA VPLIAVVLPF AVICVYYFIR NDVYDLHHAI
101: LGLLFSVLIT GVITDAIKDA VGRPRPDFFW RCFPDGIGIF HNVTKNVLCT GAKDVVKEGH KSFPSGHTSW SFAGLGFLSL YLSGKIRVFD QRGHVAKLCI
201: VILPLLVAAL VGVSRVDDYW HHWQDVFGGA IIGLTVATFC YLQFFPPPYD PDGWGPHAYF QMLADSRNDV QDSAGMNHLS VRQTELESVR

Arabidopsis Description

LPP2Lipid phosphate phosphatase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI60]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.