Factsheet for VIT_01s0011g04170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	83.0	79.4
VIT_14s0006g02480.t01	Wine grape	plasma membrane	31.23	78.61
Solyc05g008820.2.1	Tomato	plasma membrane	44.07	69.25
PGSC0003DMT400078418	Potato	plasma membrane	43.87	68.94
PGSC0003DMT400078535	Potato	plasma membrane	43.08	67.7
Solyc05g008810.2.1	Tomato	nucleus	42.89	67.39
Bra024900.1-P	Field mustard	plasma membrane	37.55	65.29
Bra017464.1-P	Field mustard	plasma membrane	37.94	64.43
GSMUA_Achr8P18310_001	Banana	plasma membrane	38.34	63.61
VIT_01s0011g04180.t01	Wine grape	plasma membrane	39.92	62.93
KRH35886	Soybean	plasma membrane	41.9	62.91
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	42.29	62.76
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	37.75	60.44
CDY25943	Canola	plastid	38.54	60.37
VIT_17s0000g03170.t01	Wine grape	plasma membrane	38.14	60.31
OQU86360	Sorghum	plasma membrane	35.97	59.28
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	36.56	59.11
CDY41071	Canola	plasma membrane	38.14	59.02
AT2G01180.3	Thale cress	plasma membrane	37.55	57.58
Zm00001d008592_P003	Maize	plasma membrane	35.77	53.55
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	34.78	53.5
TraesCS3B01G060600.1	Wheat	peroxisome	34.78	53.5
TraesCS3D01G051000.3	Wheat	plasma membrane	35.18	46.97
HORVU3Hr1G008430.3	Barley	plastid	35.18	46.97
CDY57516	Canola	plasma membrane	17.79	44.78

Protein Annotations

Gene3D:1.20.144.10	MapMan:5.2.2.1	ProteinID:CCB50873	ProteinID:CCB50873.1	UniProt:F6HEU7	EMBL:FN595752
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0008195
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016311	GO:GO:0016787	InterPro:LPP1/LPP2/LPP3_plant
PFAM:PF01569	PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014
SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0002109088	ArrayExpress:VIT_01s0011g04170	EnsemblPlantsGene:VIT_01s0011g04170	EnsemblPlants:VIT_01s0011g04170.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:3786769..3797377

Molecular Weight (calculated)

56970.0 Da

IEP (calculated)

6.639

GRAVY (calculated)

-0.002

Length

506 amino acids

Sequence
(BLAST)

001: MEAPVVLHIS DDSITILQMG TIREVEPGCH TIKSHGLQVA KDHKHDWLIL LLLVMIAIIL LVIHPFYRFV GKDMMDDLKY PLKDNTVPVW AIPIYAVLLP
101: IVIFILFYLR RRDVYDLHHS ILGLFFSMLI TAVITEAIKD AVGRPRPDFF WRCFPDGKDV YDQWGDVICH GKDSVIREGH KSFPSGHTSW SFAGLGFLSL
201: YLSGKIQAFD RKGHVAKLCI VFLPLLAASL VGVSRVDDYW HHWQDVFAGG LLGLVVAFFC YLQFFPPPYD NNGSGPYAYF KMLEGLRANR QAADSVNVQD
301: AQGMEVVLPQ QPSRNNNGFM PLSLDHDATD SLDQMEAGRR FRAVCSSWGL VASFARSQLL KPLSPTLLLP SNKDDEVHHL FDFSENKALR IPLPEVYEFF
401: NPMSRAQIQL PLPETFQDPP ADVGDAPIKS FIYKAIPSST PLDPNCVTMK KVGILNGKEE TIRESLESHH YTFSLSMLAD SKFSFSVPML PPDRAEYKGD
501: TGSKKP

Best Arabidopsis Sequence Match ( AT3G02600.6 )
(BLAST)

001: MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV
101: LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV
201: ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN
301: PTMRREEDVE TGRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.