Factsheet for PGSC0003DMT400078535

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008810.2.1	Tomato	nucleus	97.2	97.2
PGSC0003DMT400078418	Potato	plasma membrane	89.75	89.75
Bra024900.1-P	Field mustard	plasma membrane	60.56	67.01
Bra017464.1-P	Field mustard	plasma membrane	60.25	65.1
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	67.39	63.64
KRH35886	Soybean	plasma membrane	66.46	63.5
GSMUA_Achr8P18310_001	Banana	plasma membrane	59.94	63.28
CDY25943	Canola	plastid	63.35	63.16
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	61.8	62.97
AT2G01180.3	Thale cress	plasma membrane	61.8	60.3
CDY41071	Canola	plasma membrane	61.18	60.24
OQU86360	Sorghum	plasma membrane	56.83	59.61
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	59.32	59.13
PGSC0003DMT400080717	Potato	plasma membrane	50.62	58.63
PGSC0003DMT400025204	Potato	extracellular	13.66	57.89
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	56.21	57.83
Zm00001d008592_P003	Maize	plasma membrane	55.59	52.96
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	53.42	52.28
TraesCS3B01G060600.1	Wheat	peroxisome	53.42	52.28
PGSC0003DMT400078582	Potato	mitochondrion	62.73	51.93
CDY57516	Canola	plasma membrane	30.12	48.26
TraesCS3D01G051000.3	Wheat	plasma membrane	54.04	45.91
HORVU3Hr1G008430.3	Barley	plastid	53.11	45.12
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	71.12	43.29
VIT_01s0011g04170.t01	Wine grape	plasma membrane	67.7	43.08

Protein Annotations

Gene3D:1.20.144.10	EntrezGene:102591197	MapMan:5.2.2.1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LPP1/LPP2/LPP3_plant	UniProt:M1D0B8	PFAM:PF01569	EnsemblPlantsGene:PGSC0003DMG402030570	PGSC:PGSC0003DMG402030570	EnsemblPlants:PGSC0003DMT400078535
PANTHER:PTHR10165	PANTHER:PTHR10165:SF138	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	SMART:SM00014	SUPFAM:SSF48317
TMHMM:TMhelix	UniParc:UPI000296FA8B	RefSeq:XP_006344174.1	RefSeq:XP_006344175.1	RefSeq:XP_006344176.1	RefSeq:XP_006344177.1
RefSeq:XP_015162770.1	SEG:seg	:	:	:	:

Description

Phosphatidic acid phosphatase alpha [Source:PGSC_GENE;Acc:PGSC0003DMG402030570]

Coordinates

chr5:+:3529137..3533541

Molecular Weight (calculated)

36704.5 Da

IEP (calculated)

8.235

GRAVY (calculated)

0.024

Length

322 amino acids

Sequence
(BLAST)

001: MGWKDKIRTV FQGNTNAIEL GCGHTIKSHG SSVARIHMHD WLILLLLVVI EVVLYVIGPF HRYVGKDMMT DLKYPMKDNT VPVWSVPLYA VVLPIIIFLF
101: VYLRRRDVYD LHHSILGLLF AVLITAVITD AIKNGVGRPR PDFFWRCFPD GKDEYDQWGD VKCHGKASDI KEGHKSFPSG HTSWSFAGLG FLSLYLAGKI
201: KAFDRRGHVA KLCIVLLPLL MASLVGVSRV DDYWHHWQDV FTGGMIGLFV ATFCYLQFFP APYHTEGWGP YAYFRAVEEV RSSRQHVHST NGGLEIERPE
301: VQLNQRSSTT PNPFEDVEYG RM

Best Arabidopsis Sequence Match ( AT3G02600.6 )
(BLAST)

001: MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV
101: LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV
201: ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN
301: PTMRREEDVE TGRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.