Factsheet for PGSC0003DMT400078418

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008820.2.1	Tomato	plasma membrane	94.72	94.72
PGSC0003DMT400078535	Potato	plasma membrane	89.75	89.75
Bra024900.1-P	Field mustard	plasma membrane	59.63	65.98
Bra017464.1-P	Field mustard	plasma membrane	59.32	64.09
KRH35886	Soybean	plasma membrane	65.53	62.61
KRG90908	Soybean	endoplasmic reticulum, mitochondrion, peroxisome, plasma membrane	65.84	62.17
CDY17691	Canola	endoplasmic reticulum, golgi, mitochondrion, plasma membrane	60.87	62.03
GSMUA_Achr8P18310_001	Banana	plasma membrane	58.7	61.97
CDY25943	Canola	plastid	62.11	61.92
AT2G01180.3	Thale cress	plasma membrane	60.87	59.39
CDY41071	Canola	plasma membrane	60.25	59.33
OQU86360	Sorghum	plasma membrane	56.21	58.96
PGSC0003DMT400078534	Potato	endoplasmic reticulum, golgi, plasma membrane	58.7	58.51
Os01t0139600-01	Rice	endoplasmic reticulum, peroxisome, plasma membrane	55.28	56.87
PGSC0003DMT400025204	Potato	extracellular	13.35	56.58
PGSC0003DMT400080717	Potato	plasma membrane	48.45	56.12
Zm00001d008592_P003	Maize	plasma membrane	54.97	52.37
TraesCS3A01G052100.2	Wheat	endoplasmic reticulum, golgi, plasma membrane	52.8	51.67
TraesCS3B01G060600.1	Wheat	peroxisome	52.8	51.67
PGSC0003DMT400078582	Potato	mitochondrion	62.42	51.67
CDY57516	Canola	plasma membrane	29.81	47.76
TraesCS3D01G051000.3	Wheat	plasma membrane	53.42	45.38
HORVU3Hr1G008430.3	Barley	plastid	52.48	44.59
VIT_01s0011g04170.t01	Wine grape	plasma membrane	68.94	43.87
VIT_01s0011g04160.t01	Wine grape	cytosol, peroxisome, plasma membrane	69.88	42.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400078418	EnsemblPlantsGene:PGSC0003DMG400030528	EntrezGene:102590836	Gene3D:1.20.144.10	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:LPP1/LPP2/LPP3_plant	InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	ncoils:Coil	PANTHER:PTHR10165
PANTHER:PTHR10165:SF138	PFAM:PF01569	PGSC:PGSC0003DMG400030528	RefSeq:XP_006344173.1	SEG:seg	SMART:SM00014
SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI0002965E1E	UniProt:M1D026	MapMan:5.2.2.1	:

Description

Phosphatidic acid phosphatase alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400030528]

Coordinates

chr5:-:3520239..3523456

Molecular Weight (calculated)

36536.5 Da

IEP (calculated)

8.466

GRAVY (calculated)

0.092

Length

322 amino acids

Sequence
(BLAST)

001: MGWKDKIRTV FQGNTNEIER GCGHTIKSHG LSVARIHIHD WLILLLLVVI VIVLYVIGPF HRFVGKDMMT DLKYPMKDNT VPGWSIPLYA VLLPIIIFVF
101: IYLRRKDVYD LHHSILGILF AILITAVITE AIKNGVGRPR PDFFWRCFPD GKDEYDRWGN VKCHGKESDI KEGHKSFPSG HTSASFAGLG FLSLYLAGKI
201: KAFDRRGHVA KLCIVLLPLL MASLVGVSRV DDYWHHWQDV FAGGLIGLFV ATFCYLQFFP APYHTEGWGP YAYFRAVEEV RVSRQHVPPT NGGVEVERPE
301: VQLNQQSGTT TIAFEDVEHG RM

Best Arabidopsis Sequence Match ( AT3G02600.6 )
(BLAST)

001: MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV
101: LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV
201: ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN
301: PTMRREEDVE TGRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.