Factsheet for PGSC0003DMT400045318

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400005086
PGSC0003DMT400015077
PGSC0003DMT400022474
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	PGSC0003DMT400005086	AT2G27080.1	21798944
AT1G12390.1	PGSC0003DMT400022474	AT2G27080.1	21798944
AT1G12390.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G12390.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT1G12390.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G12390.1	PGSC0003DMT400050482	AT5G22290.1	21798944
AT1G62880.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G62880.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT1G62880.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	97.84	97.84
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	76.98	77.54
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	71.94	71.94
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	69.78	70.8
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	69.06	70.07
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	69.06	70.07
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	69.06	70.07
CDY15996	Canola	endoplasmic reticulum	69.06	70.07
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.35	69.34
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	67.63	68.61
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	67.63	68.61
KRH77425	Soybean	plasma membrane	65.47	68.42
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	66.91	67.88
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	66.91	67.88
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	65.47	66.42
GSMUA_Achr3P11390_001	Banana	plasma membrane	48.2	66.34
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	64.75	66.18
KRH28013	Soybean	cytosol	51.8	65.45
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	58.99	63.57
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	61.15	63.43
GSMUA_Achr9P00470_001	Banana	plasma membrane	61.15	63.43
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	60.43	62.69
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	60.43	62.69
Bra039259.1-P	Field mustard	endoplasmic reticulum	50.36	61.95
CDY32198	Canola	plasma membrane	49.64	61.06
EER87801	Sorghum	endoplasmic reticulum	58.99	60.74
PGSC0003DMT400018058	Potato	endoplasmic reticulum	57.55	59.7
PGSC0003DMT400033255	Potato	endoplasmic reticulum, plasma membrane, vacuole	46.76	59.63
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	35.25	59.04
PGSC0003DMT400033256	Potato	endoplasmic reticulum, extracellular, vacuole	54.68	56.72
GSMUA_Achr10P...	Banana	plasma membrane	58.99	51.9
AT4G12090.1	Thale cress	endoplasmic reticulum	47.48	48.89
CDY47431	Canola	endoplasmic reticulum, extracellular	45.32	46.67
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	45.32	46.67
CDY04395	Canola	endoplasmic reticulum, extracellular	45.32	46.67
Bra016774.1-P	Field mustard	plasma membrane	57.55	46.24
Bra027009.1-P	Field mustard	plasma membrane	66.91	45.15
CDY45478	Canola	plasma membrane	65.47	37.45

Protein Annotations

EnsemblPlants:PGSC0003DMT400045318	EnsemblPlantsGene:PGSC0003DMG400017581	EntrezGene:102599129	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	PGSC:PGSC0003DMG400017581	RefSeq:XP_006363909.1	SEG:seg	SMART:SM01398	TMHMM:TMhelix
UniParc:UPI0002967848	UniProt:M1BHG6	MapMan:35.1	:	:	:

Description

Cornichon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017581]

Coordinates

chr6:-:43495673..43501499

Molecular Weight (calculated)

16641.8 Da

IEP (calculated)

4.421

GRAVY (calculated)

0.760

Length

139 amino acids

Sequence
(BLAST)

001: MADVWAWLLF FFILIALLVM IVFQLMCLSD LEFDYINPYD SASRINGVVL PEFITQGVLC LLYLITGHWV MALLCVPYMY YNYRLYTRRQ HLVDVTEIFN
101: LLNWEKKQRL FKLGYIILLL FISLFWLIYS ALEDDEESL

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.