Skip to main content
crop-pal logo
Banana
Search for another protein from :
Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:nucleus
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09970_001
GSMUA_Achr1P20280_001
GSMUA_Achr3P03620_001
GSMUA_Achr4P09380_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P14710_001
GSMUA_Achr8P17040_001
GSMUA_Achr8P25150_001
GSMUA_Achr9P26950_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12390.1 GSMUA_Achr1P09970_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr4P09380_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr8P14710_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr8P17040_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr8P25150_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr9P26950_001 AT1G15760.1 21798944
AT1G12390.1 GSMUA_Achr11P... AT2G27080.1 21798944
AT1G12390.1 GSMUA_Achr3P03620_001 AT2G27080.1 21798944
AT1G12390.1 GSMUA_Achr11P... AT3G60600.1 21798944
AT1G12390.1 GSMUA_Achr11P... AT3G60600.1 21798944
AT1G12390.1 GSMUA_Achr1P20280_001 AT3G60600.1 21798944
AT1G12390.1 GSMUA_Achr5P20880_001 AT3G60600.1 21798944
AT1G12390.1 GSMUA_Achr8P11120_001 AT3G60600.1 21798944
AT1G12390.1 GSMUA_Achr4P10230_001 AT4G19030.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr9P00470_001 Banana plasma membrane 82.18 61.94
PGSC0003DMT400033255 Potato endoplasmic reticulum, plasma membrane, vacuole 58.42 54.13
EER87801 Sorghum endoplasmic reticulum 71.29 53.33
Bra039259.1-P Field mustard endoplasmic reticulum 56.44 50.44
VIT_02s0025g05160.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 68.32 50.0
TraesCS7A01G075500.1 Wheat endoplasmic reticulum 66.34 50.0
CDY32198 Canola plasma membrane 55.45 49.56
Os06t0136500-01 Rice golgi, plasma membrane, vacuole 40.59 49.4
VIT_15s0048g00890.t01 Wine grape endoplasmic reticulum, extracellular 65.35 49.25
TraesCS7D01G071100.1 Wheat endoplasmic reticulum 65.35 49.25
TraesCS4A01G373700.1 Wheat endoplasmic reticulum 65.35 49.25
Solyc06g060550.2.1 Tomato extracellular, plasma membrane, vacuole 67.33 48.92
AT1G12340.1 Thale cress extracellular, plasma membrane, plastid 62.38 48.84
PGSC0003DMT400045318 Potato endoplasmic reticulum, extracellular, vacuole 66.34 48.2
KRH28013 Soybean cytosol 51.49 47.27
Solyc05g051030.2.1 Tomato plasma membrane 62.38 46.32
PGSC0003DMT400018058 Potato endoplasmic reticulum 61.39 46.27
GSMUA_Achr10P... Banana plasma membrane 72.28 46.2
AT1G12390.1 Thale cress endoplasmic reticulum, extracellular 62.38 45.99
AT1G62880.1 Thale cress endoplasmic reticulum, extracellular 62.38 45.99
CDY31264 Canola endoplasmic reticulum, extracellular, plasma membrane 62.38 45.99
CDY21049 Canola endoplasmic reticulum, extracellular, plasma membrane 61.39 45.26
CDY45964 Canola endoplasmic reticulum, plasma membrane, vacuole 60.4 44.85
CDY26562 Canola endoplasmic reticulum, extracellular, vacuole 60.4 44.53
PGSC0003DMT400033256 Potato endoplasmic reticulum, extracellular, vacuole 58.42 44.03
PGSC0003DMT400032506 Potato endoplasmic reticulum, extracellular, vacuole 60.4 43.88
Solyc08g007510.2.1 Tomato extracellular, plasma membrane, vacuole 60.4 43.88
KRH57311 Soybean endoplasmic reticulum, extracellular, plasma membrane 59.41 43.8
KRH04043 Soybean endoplasmic reticulum, plasma membrane, vacuole 59.41 43.8
CDY15996 Canola endoplasmic reticulum 59.41 43.8
Bra019762.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 57.43 42.34
CDY30076 Canola endoplasmic reticulum, extracellular, vacuole 57.43 42.34
CDX98068 Canola endoplasmic reticulum, extracellular, vacuole 57.43 42.34
KRH77425 Soybean plasma membrane 55.45 42.11
KRH00566 Soybean endoplasmic reticulum, plasma membrane, vacuole 53.47 39.71
KRH40600 Soybean endoplasmic reticulum, plasma membrane, vacuole 52.48 38.97
CDY04395 Canola endoplasmic reticulum, extracellular 47.52 35.56
AT4G12090.1 Thale cress endoplasmic reticulum 47.52 35.56
Bra033120.1-P Field mustard endoplasmic reticulum, extracellular 47.52 35.56
CDY47431 Canola endoplasmic reticulum, extracellular 47.52 35.56
Bra016774.1-P Field mustard plasma membrane 59.41 34.68
GSMUA_Achr6P36290_001 Banana golgi, plasma membrane, vacuole 49.51 33.56
Bra027009.1-P Field mustard plasma membrane 60.4 29.61
GSMUA_Achr5P22320_001 Banana plasma membrane 50.49 27.57
CDY45478 Canola plasma membrane 59.41 24.69
Protein Annotations
EnsemblPlants:GSMUA_Achr3P11390_001EnsemblPlants:GSMUA_Achr3T11390_001EnsemblPlantsGene:GSMUA_Achr3G11390_001GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0016192InterPro:CornichonPANTHER:PTHR12290PANTHER:PTHR12290:SF18
PFAM:PF03311SEG:segSMART:SM01398TMHMM:TMhelixUniParc:UPI000295AF9EUniProt:M0SDQ6
MapMan:35.1:::::
Description
Protein cornichon homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G11390_001]
Coordinates
chr3:-:8450415..8450835
Molecular Weight (calculated)
12006.9 Da
IEP (calculated)
8.484
GRAVY (calculated)
0.397
Length
101 amino acids
Sequence
(BLAST)
001: MSLADLEFDC INPYDSASQI NKVIVPEFVL QGSLCLLFLL SGHWLMFLFC VPNLYYNFRL YQRRQHLIDV TEVFNQINRE KKRRLFKVVS VVGLLLMSLF
101: W
Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.