Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033255 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 81.34 | 100.0 |
| PGSC0003DMT400018058 | Potato | endoplasmic reticulum | 79.1 | 79.1 |
| VIT_15s0048g00890.t01 | Wine grape | endoplasmic reticulum, extracellular | 59.7 | 59.7 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 44.03 | 58.42 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 58.21 | 58.21 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 57.46 | 55.4 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 56.72 | 54.68 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 33.58 | 54.22 |
| EER87801 | Sorghum | endoplasmic reticulum | 53.73 | 53.33 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 49.25 | 49.25 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 48.51 | 48.51 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 48.51 | 48.51 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 48.51 | 47.79 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 47.76 | 47.06 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.24 | 44.3 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400033256 | EnsemblPlantsGene:PGSC0003DMG401012773 | EntrezGene:102579679 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 |
| PFAM:PF03311 | PGSC:PGSC0003DMG401012773 | RefSeq:XP_015166782.1 | RefSeq:XP_015166786.1 | SEG:seg | SignalP:SignalP-TM |
| SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000296399F | UniProt:M1AYV1 | MapMan:35.1 | : |
Description
Cornichon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG401012773]
Coordinates
chr1:+:70749317..70751290
Molecular Weight (calculated)
15545.5 Da
IEP (calculated)
4.740
GRAVY (calculated)
0.881
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLLSWLLS FFLLVAVLAI VLYQVMCLAD LENDYVNPYD SASEINILVV PEFVLQGALC FLHLVMGHWL MCLVCLPYLY YDVKVYTDRR HLLDVTEIFN
101: QLPWEKKIRL FKLGYLGIHL AISIICMIWS IVAE
101: QLPWEKKIRL FKLGYLGIHL AISIICMIWS IVAE
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.