Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 6
- plasma membrane 5
- endoplasmic reticulum 8
- vacuole 6
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g051030.2.1 | Tomato | plasma membrane | 98.51 | 97.06 |
| PGSC0003DMT400033256 | Potato | endoplasmic reticulum, extracellular, vacuole | 79.1 | 79.1 |
| PGSC0003DMT400033255 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 64.18 | 78.9 |
| VIT_15s0048g00890.t01 | Wine grape | endoplasmic reticulum, extracellular | 63.43 | 63.43 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 46.27 | 61.39 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 60.45 | 60.45 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 35.82 | 57.83 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 59.7 | 57.55 |
| EER87801 | Sorghum | endoplasmic reticulum | 55.97 | 55.56 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 56.72 | 54.68 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 52.24 | 52.24 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 51.49 | 51.49 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 51.49 | 51.49 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 50.75 | 50.0 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 50.0 | 49.26 |
| GSMUA_Achr10P... | Banana | plasma membrane | 52.99 | 44.94 |
Protein Annotations
| EntrezGene:102586917 | MapMan:35.1 | InterPro:Cornichon | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | UniProt:M1A9Z0 | PFAM:PF03311 | EnsemblPlantsGene:PGSC0003DMG400007015 |
| PGSC:PGSC0003DMG400007015 | EnsemblPlants:PGSC0003DMT400018058 | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | SMART:SM01398 | TMHMM:TMhelix |
| UniParc:UPI000296C25D | RefSeq:XP_006345511.1 | SEG:seg | : | : | : |
Description
Cornichon family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007015]
Coordinates
chr5:+:45581656..45587896
Molecular Weight (calculated)
15847.7 Da
IEP (calculated)
4.992
GRAVY (calculated)
0.743
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLLSWLFS FFLLVAVLGT ILYQLMCLAD LEYDYVNPYD SASRINRVVV PEFALQGALC FLHLVTGHWL MFLICLPYLY YNIKVYTDRC HLVDVTEIFN
101: QLPWDKRVRL YKLGYLVILL AFSIFWMVWS IVDE
101: QLPWDKRVRL YKLGYLVILL AFSIFWMVWS IVDE
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [extracellular,endoplasmic reticulum]
SUBAcon: [extracellular,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.