Factsheet for GSMUA_Achr10P07680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 7
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09970_001
GSMUA_Achr1P20280_001
GSMUA_Achr3P03620_001
GSMUA_Achr4P09380_001
GSMUA_Achr4P10230_001
GSMUA_Achr5P20880_001
GSMUA_Achr8P11120_001
GSMUA_Achr8P14710_001
GSMUA_Achr8P17040_001
GSMUA_Achr8P25150_001
GSMUA_Achr9P26950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	GSMUA_Achr1P09970_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr4P09380_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr8P14710_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr8P17040_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr8P25150_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr9P26950_001	AT1G15760.1	21798944
AT1G12390.1	GSMUA_Achr11P...	AT2G27080.1	21798944
AT1G12390.1	GSMUA_Achr3P03620_001	AT2G27080.1	21798944
AT1G12390.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G12390.1	GSMUA_Achr11P...	AT3G60600.1	21798944
AT1G12390.1	GSMUA_Achr1P20280_001	AT3G60600.1	21798944
AT1G12390.1	GSMUA_Achr5P20880_001	AT3G60600.1	21798944
AT1G12390.1	GSMUA_Achr8P11120_001	AT3G60600.1	21798944
AT1G12390.1	GSMUA_Achr4P10230_001	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P00470_001	Banana	plasma membrane	70.89	83.58
GSMUA_Achr3P11390_001	Banana	plasma membrane	46.2	72.28
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	37.34	71.08
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	59.49	70.15
EER87801	Sorghum	endoplasmic reticulum	59.49	69.63
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	58.86	69.4
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	58.86	69.4
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	53.16	60.87
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	53.16	60.43
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	51.27	59.12
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	51.27	59.12
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	51.9	58.99
KRH77425	Soybean	plasma membrane	47.47	56.39
KRH28013	Soybean	cytosol	39.24	56.36
VIT_15s0048g00890.t01	Wine grape	endoplasmic reticulum, extracellular	47.47	55.97
PGSC0003DMT400033255	Potato	endoplasmic reticulum, plasma membrane, vacuole	38.61	55.96
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	47.47	53.96
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	47.47	53.96
Solyc05g051030.2.1	Tomato	plasma membrane	46.2	53.68
PGSC0003DMT400018058	Potato	endoplasmic reticulum	44.94	52.99
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	43.04	52.71
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	45.57	52.55
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	45.57	52.55
PGSC0003DMT400033256	Potato	endoplasmic reticulum, extracellular, vacuole	44.3	52.24
Bra039259.1-P	Field mustard	endoplasmic reticulum	37.34	52.21
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	44.94	51.82
CDY15996	Canola	endoplasmic reticulum	44.3	51.09
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	44.3	51.09
CDY32198	Canola	plasma membrane	36.08	50.44
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	43.67	50.37
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	43.67	50.37
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	43.67	50.37
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	43.04	50.0
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	43.04	49.63
KRH00566	Soybean	endoplasmic reticulum, plasma membrane, vacuole	37.34	43.38
KRH40600	Soybean	endoplasmic reticulum, plasma membrane, vacuole	36.71	42.65
GSMUA_Achr6P36290_001	Banana	golgi, plasma membrane, vacuole	38.61	40.94
AT4G12090.1	Thale cress	endoplasmic reticulum	34.81	40.74
CDY04395	Canola	endoplasmic reticulum, extracellular	33.54	39.26
CDY47431	Canola	endoplasmic reticulum, extracellular	33.54	39.26
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	33.54	39.26
Bra016774.1-P	Field mustard	plasma membrane	40.51	36.99
Bra027009.1-P	Field mustard	plasma membrane	46.2	35.44
GSMUA_Achr5P22320_001	Banana	plasma membrane	38.61	32.97
CDY45478	Canola	plasma membrane	43.67	28.4

Protein Annotations

EnsemblPlants:GSMUA_Achr10P07680_001	EnsemblPlants:GSMUA_Achr10T07680_001	EnsemblPlantsGene:GSMUA_Achr10G07680_001	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18
PFAM:PF03311	SEG:seg	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI0002963011	UniProt:M0RG94
MapMan:35.1	:	:	:	:	:

Description

Protein cornichon homolog 4 [Source:GMGC_GENE;Acc:GSMUA_Achr10G07680_001]

Coordinates

chr10:+:17840530..17845100

Molecular Weight (calculated)

18941.0 Da

IEP (calculated)

6.770

GRAVY (calculated)

0.844

Length

158 amino acids

Sequence
(BLAST)

001: MVFFWLTAFF LVVILIALVI HQLMCLADLE FDYINPYDVA SRINKVIYPE FALQGVLGLL FLLSGNWLMF TFCVPIIYYN VRLYQRQQHL VDVTEIFNHL
101: NREKKRRLFK LINLVIVLFL CLIWMIYSIL EEAEYFEIYL FGWTQVPKVI SLILMIEK

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.