Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 88.32 | 88.97 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 81.75 | 81.75 |
| CDY32198 | Canola | plasma membrane | 65.69 | 79.65 |
| Bra039259.1-P | Field mustard | endoplasmic reticulum | 62.04 | 75.22 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 70.07 | 74.42 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 69.34 | 68.84 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 66.42 | 65.47 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 64.96 | 64.03 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 62.77 | 62.77 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 45.99 | 62.38 |
| KRH77425 | Soybean | plasma membrane | 59.85 | 61.65 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.31 | 61.31 |
| KRH28013 | Soybean | cytosol | 48.91 | 60.91 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 56.2 | 57.46 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 57.66 | 56.83 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 57.66 | 56.83 |
| Bra027009.1-P | Field mustard | plasma membrane | 82.48 | 54.85 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 32.85 | 54.22 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 52.55 | 53.73 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 52.55 | 53.73 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 51.82 | 52.99 |
| EER87801 | Sorghum | endoplasmic reticulum | 51.82 | 52.59 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 48.91 | 49.63 |
| CDY45478 | Canola | plasma membrane | 83.21 | 46.91 |
| GSMUA_Achr10P... | Banana | plasma membrane | 49.63 | 43.04 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 37.23 | 34.93 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842589 | UniProt:A0A178W9P6 | ProteinID:AAF75818.1 | ProteinID:AEE34016.1 | EMBL:AK118647 |
| ArrayExpress:AT1G62880 | EnsemblPlantsGene:AT1G62880 | RefSeq:AT1G62880 | TAIR:AT1G62880 | RefSeq:AT1G62880-TAIR-G | EnsemblPlants:AT1G62880.1 |
| TAIR:AT1G62880.1 | Unigene:At.70087 | EMBL:BT004730 | InterPro:Cornichon | GO:GO:0003674 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_176476.1 |
| ProteinID:OAP13782.1 | PFAM:PF03311 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | UniProt:Q8GWT5 |
| SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000000C452 | SEG:seg | : | : |
Description
Protein cornichon homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWT5]
Coordinates
chr1:+:23291900..23293626
Molecular Weight (calculated)
16443.3 Da
IEP (calculated)
4.568
GRAVY (calculated)
0.693
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVWTWIIS FLILITLLGL IVYQLISLAD LEFDYINPYD SASRINFVVL PESILQGFLC VFYLVTGHWF MALLCVPYLY YNFHLYSRKQ HLIDVTEIFN
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.