Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 84.44 | 84.44 |
| Bra033120.1-P | Field mustard | endoplasmic reticulum, extracellular | 84.44 | 84.44 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 83.7 | 83.7 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 53.33 | 52.17 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 52.59 | 51.82 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 31.11 | 50.6 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 49.63 | 48.91 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 49.63 | 48.2 |
| KRH77425 | Soybean | plasma membrane | 47.41 | 48.12 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 35.56 | 47.52 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 48.89 | 47.48 |
| KRH28013 | Soybean | cytosol | 38.52 | 47.27 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 47.41 | 46.72 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 44.44 | 46.51 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 46.67 | 45.99 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 45.93 | 44.6 |
| EER87801 | Sorghum | endoplasmic reticulum | 44.44 | 44.44 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 43.7 | 44.03 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 45.19 | 43.88 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 42.96 | 43.28 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 42.96 | 43.28 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 42.22 | 42.54 |
| AT3G12180.1 | Thale cress | endoplasmic reticulum | 38.52 | 35.62 |
| GSMUA_Achr10P... | Banana | plasma membrane | 40.74 | 34.81 |
Protein Annotations
| MapMan:35.1 | EntrezGene:826817 | ProteinID:AEE83095.1 | ArrayExpress:AT4G12090 | EnsemblPlantsGene:AT4G12090 | RefSeq:AT4G12090 |
| TAIR:AT4G12090 | RefSeq:AT4G12090-TAIR-G | EnsemblPlants:AT4G12090.1 | TAIR:AT4G12090.1 | ProteinID:CAB40950.1 | ProteinID:CAB78252.1 |
| InterPro:Cornichon | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_192946.2 | PFAM:PF03311 | PO:PO:0000293 | PANTHER:PTHR12290 |
| PANTHER:PTHR12290:SF18 | UniProt:Q9SZ74 | SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000034F1E9 | : |
Description
Protein cornichon homolog 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ74]
Coordinates
chr4:-:7241906..7243228
Molecular Weight (calculated)
15961.8 Da
IEP (calculated)
7.052
GRAVY (calculated)
0.466
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDLLDWIIS FLFLATLIII VIYQLTCLAD LEFDRINPYD VSSRINRMVL PEFGLQGLLC LYYILTGHWF MAVLSLPHLF YNIRLYMKRE HLADVTELYN
101: TNKWEQKKRV YKIGHIALSI FITTYWLIHS ALGDI
101: TNKWEQKKRV YKIGHIALSI FITTYWLIHS ALGDI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.