Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 6
- golgi 6
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 96.35 | 96.35 |
| KRH77425 | Soybean | plasma membrane | 78.83 | 81.2 |
| KRH28013 | Soybean | cytosol | 61.31 | 76.36 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 75.18 | 74.64 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 69.34 | 68.35 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 67.88 | 66.91 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 65.69 | 65.69 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 64.96 | 64.96 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 64.96 | 64.96 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 64.23 | 64.23 |
| CDY15996 | Canola | endoplasmic reticulum | 63.5 | 63.5 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.77 | 62.77 |
| Bra019762.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 62.77 | 62.77 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 62.77 | 62.77 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 61.31 | 62.69 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 37.96 | 62.65 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 62.77 | 61.87 |
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 61.31 | 61.76 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 61.31 | 61.31 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 59.85 | 61.19 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 62.04 | 61.15 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 59.12 | 60.45 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 59.12 | 60.45 |
| EER87801 | Sorghum | endoplasmic reticulum | 59.12 | 60.0 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 43.8 | 59.41 |
| Bra039259.1-P | Field mustard | endoplasmic reticulum | 48.91 | 59.29 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 54.74 | 58.14 |
| CDY32198 | Canola | plasma membrane | 47.45 | 57.52 |
| GSMUA_Achr10P... | Banana | plasma membrane | 59.12 | 51.27 |
| KRH40600 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 47.45 | 47.79 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 45.99 | 46.67 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 45.99 | 46.67 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 45.99 | 46.67 |
| Bra033120.1-P | Field mustard | endoplasmic reticulum, extracellular | 45.99 | 46.67 |
| KRH00566 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 45.99 | 46.32 |
| KRH67017 | Soybean | plasma membrane | 40.15 | 46.22 |
| Bra016774.1-P | Field mustard | plasma membrane | 53.28 | 42.2 |
| KRG95334 | Soybean | plasma membrane | 42.34 | 40.85 |
| Bra027009.1-P | Field mustard | plasma membrane | 61.31 | 40.78 |
| KRH33017 | Soybean | plasma membrane | 38.69 | 34.42 |
| CDY45478 | Canola | plasma membrane | 59.12 | 33.33 |
| KRH71885 | Soybean | plasma membrane | 40.15 | 32.35 |
Protein Annotations
| EMBL:ACUP02010375 | EMBL:BT089918 | EnsemblPlants:KRH04043 | EnsemblPlantsGene:GLYMA_17G136000 | EntrezGene:100306019 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon |
| PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | PFAM:PF03311 | ProteinID:KRH04043 | ProteinID:KRH04043.1 | SEG:seg |
| SMART:SM01398 | TMHMM:TMhelix | UniParc:UPI000189CFC2 | UniProt:C6SXM1 | MapMan:35.1 | : |
Description
hypothetical protein
Coordinates
chr17:+:10964875..10968795
Molecular Weight (calculated)
16357.4 Da
IEP (calculated)
5.578
GRAVY (calculated)
0.751
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MADLFAWLIS FFILIALIVL VIYQLMCLAD LEFDYINPYD SSSRINKVIL PEYIIVGVLF GFYLVTGHWI MSLICAPYLY YNVRLYRQGK HLVDVTEIFN
101: LLPKEKKQRL FKLFYIVFIL FLSLFWMIYT SLDDHDD
101: LLPKEKKQRL FKLFYIVFIL FLSLFWMIYT SLDDHDD
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.