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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • plastid 1
  • extracellular 5
  • endoplasmic reticulum 5
  • vacuole 4
  • plasma membrane 5
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX70995
CDX71796
CDX77067
CDX78905
CDX83252
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY36586
CDY38543
CDY41153
CDY48196
CDY48365
CDY61373

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G12390.1 CDY36586 AT1G15760.1 21798944
AT1G12390.1 CDY61373 AT1G15760.1 21798944
AT1G12390.1 CDX77067 AT2G27080.1 21798944
AT1G12390.1 CDX83252 AT2G27080.1 21798944
AT1G12390.1 CDY38543 AT2G27080.1 21798944
AT1G12390.1 CDY48196 AT2G27080.1 21798944
AT1G12390.1 CDX67837 AT3G60600.1 21798944
AT1G12390.1 CDX71796 AT3G60600.1 21798944
AT1G12390.1 CDX89063 AT3G60600.1 21798944
AT1G12390.1 CDY41153 AT3G60600.1 21798944
AT1G12390.1 CDY48365 AT3G60600.1 21798944
AT1G12390.1 CDX78905 AT4G19030.1 21798944
AT1G12390.1 CDX98596 AT4G19030.1 21798944
AT1G12390.1 CDX99411 AT4G19030.1 21798944
AT1G12390.1 CDY01565 AT4G19030.1 21798944
AT1G12390.1 CDX70995 AT5G22290.1 21798944
AT1G12390.1 CDX88803 AT5G22290.1 21798944
AT1G12390.1 CDX92368 AT5G22290.1 21798944
AT1G12390.1 CDY09128 AT5G22290.1 21798944
AT1G12390.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY31264 Canola endoplasmic reticulum, extracellular, plasma membrane 98.54 98.54
AT1G12390.1 Thale cress endoplasmic reticulum, extracellular 96.35 96.35
CDY26562 Canola endoplasmic reticulum, extracellular, vacuole 96.35 96.35
CDY15996 Canola endoplasmic reticulum 95.62 95.62
CDX98068 Canola endoplasmic reticulum, extracellular, vacuole 93.43 93.43
CDY30076 Canola endoplasmic reticulum, extracellular, vacuole 93.43 93.43
CDY45964 Canola endoplasmic reticulum, plasma membrane, vacuole 83.21 83.82
AT1G12340.1 Thale cress extracellular, plasma membrane, plastid 78.1 82.95
CDY32198 Canola plasma membrane 62.77 76.11
VIT_02s0025g05160.t01 Wine grape endoplasmic reticulum, extracellular, plasma membrane 72.26 71.74
PGSC0003DMT400045318 Potato endoplasmic reticulum, extracellular, vacuole 69.34 68.35
KRH57311 Soybean endoplasmic reticulum, extracellular, plasma membrane 67.15 67.15
Solyc06g060550.2.1 Tomato extracellular, plasma membrane, vacuole 67.88 66.91
KRH04043 Soybean endoplasmic reticulum, plasma membrane, vacuole 65.69 65.69
KRH77425 Soybean plasma membrane 63.5 65.41
KRH28013 Soybean cytosol 51.09 63.64
GSMUA_Achr3P11390_001 Banana plasma membrane 45.26 61.39
Bra016774.1-P Field mustard plasma membrane 75.91 60.12
PGSC0003DMT400032506 Potato endoplasmic reticulum, extracellular, vacuole 59.12 58.27
GSMUA_Achr9P00470_001 Banana plasma membrane 56.93 58.21
Os06t0136500-01 Rice golgi, plasma membrane, vacuole 35.04 57.83
Solyc08g007510.2.1 Tomato extracellular, plasma membrane, vacuole 58.39 57.55
TraesCS7A01G075500.1 Wheat endoplasmic reticulum 55.47 56.72
EER87801 Sorghum endoplasmic reticulum 55.47 56.3
TraesCS4A01G373700.1 Wheat endoplasmic reticulum 54.74 55.97
TraesCS7D01G071100.1 Wheat endoplasmic reticulum 54.74 55.97
CDY47431 Canola endoplasmic reticulum, extracellular 50.37 51.11
CDY04395 Canola endoplasmic reticulum, extracellular 50.37 51.11
GSMUA_Achr10P... Banana plasma membrane 51.82 44.94
CDY45478 Canola plasma membrane 78.1 44.03
CDY52620 Canola endoplasmic reticulum 43.07 40.41
CDY50566 Canola endoplasmic reticulum, extracellular, plasma membrane 41.61 39.04
CDY42135 Canola endoplasmic reticulum 41.61 39.04
CDY08445 Canola endoplasmic reticulum 41.61 39.04
Protein Annotations
EnsemblPlants:CDY21049EnsemblPlantsGene:GSBRNA2T00015214001GO:A0A078G6M8GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0016192InterPro:CornichonPANTHER:PTHR12290PANTHER:PTHR12290:SF18
PFAM:PF03311ProteinID:CDY21049ProteinID:CDY21049.1SMART:SM01398TMHMM:TMhelixUniParc:UPI0004EE0E61
UniProt:A0A078G6M8MapMan:35.1::::
Description
BnaA08g24760DBnaA08g24760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6M8]
Coordinates
chrLK032115:+:472339..473781
Molecular Weight (calculated)
16460.4 Da
IEP (calculated)
4.522
GRAVY (calculated)
0.674
Length
137 amino acids
Sequence
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIIQGVLC VFYLLTGHWF MSLLCLPYLY YNFQLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIILNL FLTIFWMIYS AMDDYED
Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)
001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED
Arabidopsis Description
Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.