Factsheet for Solyc06g060550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009160.2.1
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	Solyc01g009160.2.1	AT2G27080.1	21798944
AT1G12390.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT1G12390.1	Solyc03g005980.2.1	AT4G19030.1	21798944
AT1G12390.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G12390.1	Solyc11g068750.1.1	AT5G22290.1	21798944
AT1G62880.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT1G62880.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT1G62880.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	97.84	97.84
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	76.98	77.54
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	72.66	72.66
KRH77425	Soybean	plasma membrane	66.91	69.92
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	68.35	69.34
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	68.35	69.34
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	68.35	69.34
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	67.63	68.61
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	67.63	68.61
CDY15996	Canola	endoplasmic reticulum	67.63	68.61
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	67.63	68.61
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	67.63	68.61
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	66.91	67.88
GSMUA_Achr3P11390_001	Banana	plasma membrane	48.92	67.33
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	66.19	67.15
KRH28013	Soybean	cytosol	52.52	66.36
AT1G62880.1	Thale cress	endoplasmic reticulum, extracellular	64.03	64.96
GSMUA_Achr9P00470_001	Banana	plasma membrane	62.59	64.93
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	63.31	64.71
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	59.71	64.34
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	61.15	63.43
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	60.43	62.69
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	60.43	62.69
Solyc05g051030.2.1	Tomato	plasma membrane	59.71	61.03
EER87801	Sorghum	endoplasmic reticulum	58.99	60.74
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	35.97	60.24
CDY32198	Canola	plasma membrane	48.92	60.18
Bra039259.1-P	Field mustard	endoplasmic reticulum	48.92	60.18
GSMUA_Achr10P...	Banana	plasma membrane	60.43	53.16
AT4G12090.1	Thale cress	endoplasmic reticulum	48.2	49.63
CDY47431	Canola	endoplasmic reticulum, extracellular	46.04	47.41
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	46.04	47.41
CDY04395	Canola	endoplasmic reticulum, extracellular	46.04	47.41
Bra016774.1-P	Field mustard	plasma membrane	56.83	45.66
Bra027009.1-P	Field mustard	plasma membrane	65.47	44.17
CDY45478	Canola	plasma membrane	64.03	36.63
Solyc03g063970.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	42.45	31.55

Protein Annotations

EnsemblPlants:Solyc06g060550.2.1	EnsemblPlantsGene:Solyc06g060550.2	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:Cornichon	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	PFAM:PF03311
SEG:seg	SMART:SM01398	TMHMM:TMhelix	UniParc:UPI0002766373	UniProt:K4C6N5	MapMan:35.1

Description

No Description!

Coordinates

chr6:-:38558471..38562684

Molecular Weight (calculated)

16627.7 Da

IEP (calculated)

4.421

GRAVY (calculated)

0.771

Length

139 amino acids

Sequence
(BLAST)

001: MADVWAWLLF FFILIALLVM VVFQLMCLSD LEFDYINPYD SASRINAVVL PEFITQGVLC LLYLITGHWV MALLCVPYMY YNYRLYTRRQ HLVDVTEIFN
101: LLNWEKKQRL FKLGYIVLLL FISLFWLIYS ALEDDEESL

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.