Factsheet for Bra016774.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
plasma membrane 5
extracellular 3
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane, plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000526.1-P
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra012567.1-P
Bra013361.1-P
Bra014481.1-P
Bra020182.1-P
Bra026110.1-P
Bra034321.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	Bra026110.1-P	AT1G15760.1	21798944
AT1G12390.1	Bra000526.1-P	AT2G27080.1	21798944
AT1G12390.1	Bra034321.1-P	AT2G27080.1	21798944
AT1G12390.1	Bra003423.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra007547.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra014481.1-P	AT3G60600.1	21798944
AT1G12390.1	Bra012567.1-P	AT4G19030.1	21798944
AT1G12390.1	Bra013361.1-P	AT4G19030.1	21798944
AT1G12390.1	Bra002403.1-P	AT5G22290.1	21798944
AT1G12390.1	Bra006619.1-P	AT5G22290.1	21798944
AT1G12390.1	Bra020182.1-P	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	58.96	79.07
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	60.12	75.91
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	57.8	72.99
Bra019762.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	56.07	70.8
Bra039259.1-P	Field mustard	endoplasmic reticulum	45.09	69.03
KRH28013	Soybean	cytosol	41.04	64.55
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	48.55	60.87
GSMUA_Achr3P11390_001	Banana	plasma membrane	34.68	59.41
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	46.24	57.55
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	45.66	56.83
KRH77425	Soybean	plasma membrane	41.62	54.14
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	42.77	54.01
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	42.2	53.28
GSMUA_Achr9P00470_001	Banana	plasma membrane	39.88	51.49
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	41.04	51.08
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	40.46	50.36
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	38.73	50.0
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	38.73	50.0
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	38.73	50.0
EER87801	Sorghum	endoplasmic reticulum	38.15	48.89
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	21.97	45.78
Bra027009.1-P	Field mustard	plasma membrane	52.6	44.17
Bra033120.1-P	Field mustard	endoplasmic reticulum, extracellular	32.95	42.22
GSMUA_Achr10P...	Banana	plasma membrane	36.99	40.51
Bra034769.1-P	Field mustard	endoplasmic reticulum	28.32	33.56

Protein Annotations

MapMan:14.6.3.2.7	MapMan:15.3.5.6.1.7	Gene3D:3.30.70.1220	EnsemblPlantsGene:Bra016774	EnsemblPlants:Bra016774.1	EnsemblPlants:Bra016774.1-P
InterPro:Cornichon	GO:GO:0000439	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006355	GO:GO:0006810	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR035935	UniProt:M4DJU6	PFAM:PF03311	PFAM:PF06331	PANTHER:PTHR12290
PANTHER:PTHR12290:SF18	SMART:SM01395	SMART:SM01398	SUPFAM:SSF142897	InterPro:TFB5-like_sf	InterPro:TFIIH_TTDA/Tfb5
TMHMM:TMhelix	UniParc:UPI000254604A	:	:	:	:

Description

AT1G12340 (E=9e-055) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular signaling cascade; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cornichon (InterPro:IPR003377); BEST Arabidopsis thaliana protein match is: cornichon family protein (TAIR:AT1G12390.1); Has 463 Blast hits to 463 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 278; Fungi - 110; Plants - 41; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

Coordinates

chrA08:-:19904134..19905756

Molecular Weight (calculated)

20521.3 Da

IEP (calculated)

8.316

GRAVY (calculated)

0.316

Length

173 amino acids

Sequence
(BLAST)

001: MSCVMSSTIA QWSLSFSLVC LADLEFDYIN PYDSASRINS VVLPEFIIQG VLCVFYLLTR HWFMSLLCLP YLFYNFQLYS KRQHLVDVTE IFNLLNWEKK
101: KRLFKLAYII LNLFLTIFWL KLIVNMNNSM PSSQRFIIHV LDSTHLFVQP HVEQMIRSAI AEFRNQNSYE KPT

Best Arabidopsis Sequence Match ( AT1G12340.1 )
(BLAST)

001: MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED

Arabidopsis Description

Probable protein cornichon homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDD7]
SUBAcon: [plasma membrane,plastid,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.