Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 88.97 | 88.32 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.82 | 83.21 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 83.82 | 83.21 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 83.82 | 83.21 |
| CDY15996 | Canola | endoplasmic reticulum | 83.09 | 82.48 |
| CDY32198 | Canola | plasma membrane | 67.65 | 81.42 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.88 | 80.29 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 80.88 | 80.29 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 69.12 | 68.12 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 66.18 | 64.75 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 63.97 | 63.5 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 64.71 | 63.31 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 61.76 | 61.31 |
| KRH28013 | Soybean | cytosol | 49.26 | 60.91 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 44.85 | 60.4 |
| KRH77425 | Soybean | plasma membrane | 58.82 | 60.15 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 55.88 | 56.72 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 57.35 | 56.12 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 57.35 | 56.12 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 53.68 | 54.48 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 53.68 | 54.48 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 33.09 | 54.22 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 52.94 | 53.73 |
| EER87801 | Sorghum | endoplasmic reticulum | 52.94 | 53.33 |
| CDY45478 | Canola | plasma membrane | 91.91 | 51.44 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 49.26 | 49.63 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 49.26 | 49.63 |
| GSMUA_Achr10P... | Banana | plasma membrane | 50.0 | 43.04 |
| CDY52620 | Canola | endoplasmic reticulum | 44.85 | 41.78 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.85 | 41.78 |
| CDY08445 | Canola | endoplasmic reticulum | 41.91 | 39.04 |
| CDY42135 | Canola | endoplasmic reticulum | 41.18 | 38.36 |
Protein Annotations
| EnsemblPlants:CDY45964 | EnsemblPlantsGene:GSBRNA2T00082970001 | GO:A0A078I991 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | InterPro:Cornichon | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 |
| PFAM:PF03311 | ProteinID:CDY45964 | ProteinID:CDY45964.1 | SEG:seg | SMART:SM01398 | TMHMM:TMhelix |
| UniParc:UPI000189CFD7 | UniProt:A0A078I991 | MapMan:35.1 | : | : | : |
Description
BnaA09g13020DBnaA09g13020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I991]
Coordinates
chrLK032644:+:25137..26378
Molecular Weight (calculated)
16375.2 Da
IEP (calculated)
4.393
GRAVY (calculated)
0.674
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVWTWIIS FLILITLVGF IVYQLICLAD LEFDYINPYD SASRINFVVL PEFLLQGFLC FFYLVTGHWF MSLLGVPYLY YNFQLYSKRQ HLVDVTEIFN
101: LLDWEKKKRL FKLAYMILTL FLTIFWLIYS TLDDED
101: LLDWEKKKRL FKLAYMILTL FLTIFWLIYS TLDDED
001: MGEVWTWIIS FLILITLLGL IVYQLISLAD LEFDYINPYD SASRINFVVL PESILQGFLC VFYLVTGHWF MALLCVPYLY YNFHLYSRKQ HLIDVTEIFN
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED
101: LLDWEKKKRL FKLAYIILTL FLTIFWLIYS TLDDYED
Arabidopsis Description
Protein cornichon homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWT5]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.