Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034769.1-P | Field mustard | endoplasmic reticulum | 93.15 | 93.15 |
| CDY08445 | Canola | endoplasmic reticulum | 93.15 | 93.15 |
| CDY42135 | Canola | endoplasmic reticulum | 92.47 | 92.47 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 84.25 | 84.25 |
| CDY52620 | Canola | endoplasmic reticulum | 84.25 | 84.25 |
| VIT_08s0007g07860.t01 | Wine grape | endoplasmic reticulum, extracellular, vacuole | 54.79 | 61.07 |
| KRH67017 | Soybean | plasma membrane | 41.78 | 51.26 |
| TraesCS5B01G108800.1 | Wheat | endoplasmic reticulum | 49.32 | 48.32 |
| TraesCS5A01G104500.1 | Wheat | endoplasmic reticulum | 49.32 | 48.32 |
| GSMUA_Achr6P36290_001 | Banana | golgi, plasma membrane, vacuole | 49.32 | 48.32 |
| TraesCS5D01G116400.1 | Wheat | endoplasmic reticulum | 49.32 | 47.06 |
| EES16032 | Sorghum | endoplasmic reticulum | 47.95 | 46.98 |
| Os12t0506400-01 | Rice | endoplasmic reticulum, plasma membrane, vacuole | 47.26 | 46.31 |
| HORVU5Hr1G028480.1 | Barley | cytosol, vacuole | 41.1 | 45.8 |
| KRG95334 | Soybean | plasma membrane | 44.52 | 45.77 |
| Zm00001d041744_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 43.15 | 45.0 |
| KRH33017 | Soybean | plasma membrane | 47.26 | 44.81 |
| Zm00001d035235_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 47.95 | 41.67 |
| KRH71885 | Soybean | plasma membrane | 47.26 | 40.59 |
| AT1G12390.1 | Thale cress | endoplasmic reticulum, extracellular | 37.67 | 40.15 |
| GSMUA_Achr5P22320_001 | Banana | plasma membrane | 49.32 | 38.92 |
| AT4G12090.1 | Thale cress | endoplasmic reticulum | 35.62 | 38.52 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 34.93 | 37.23 |
| AT1G12340.1 | Thale cress | extracellular, plasma membrane, plastid | 32.19 | 36.43 |
| Solyc03g063970.2.1 | Tomato | endoplasmic reticulum, plasma membrane, vacuole | 44.52 | 34.76 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820395 | UniProt:A0A178VFC7 | ProteinID:AAG51073.1 | ProteinID:AEE75162.1 | EMBL:AK227896 |
| ArrayExpress:AT3G12180 | EnsemblPlantsGene:AT3G12180 | RefSeq:AT3G12180 | TAIR:AT3G12180 | RefSeq:AT3G12180-TAIR-G | EnsemblPlants:AT3G12180.1 |
| TAIR:AT3G12180.1 | EMBL:BT006194 | InterPro:Cornichon | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_187825.1 | ProteinID:OAP04095.1 |
| PFAM:PF03311 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | UniProt:Q9C7D7 | SMART:SM01398 |
| TMHMM:TMhelix | UniParc:UPI000009E954 | : | : | : | : |
Description
Protein cornichon homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7D7]
Coordinates
chr3:+:3883330..3884864
Molecular Weight (calculated)
17368.5 Da
IEP (calculated)
5.615
GRAVY (calculated)
0.828
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWDLFLWIV SFFVSLALVA SVFYQVICLT DLEADYLNPF ETSTRINRLV IPEFILQGSL CLLFLLTWHW VFFLVAVPVT VYHAMLYKER RYLIDVTEVF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
101: RGISFEKKLR YTKLGFYVFL FIMVVFRLTL SAVYSFTEDD DLLHLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.