Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 6
- endoplasmic reticulum 5
- vacuole 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15499 | Canola | plasma membrane | 93.29 | 92.73 |
| AT1G04340.1 | Thale cress | plasma membrane | 87.2 | 89.94 |
| CDY60669 | Canola | extracellular, plasma membrane, vacuole | 87.8 | 88.89 |
| CDY18220 | Canola | extracellular, plasma membrane, vacuole | 86.59 | 87.65 |
| CDY32939 | Canola | plasma membrane | 80.49 | 84.08 |
| CDY59304 | Canola | plasma membrane | 79.88 | 83.44 |
| CDY10063 | Canola | plasma membrane | 68.9 | 62.43 |
| VIT_05s0049g00200.t01 | Wine grape | extracellular | 58.54 | 61.15 |
| KRG92302 | Soybean | extracellular | 57.93 | 60.51 |
| KRH34500 | Soybean | extracellular | 57.32 | 59.87 |
| KRH31721 | Soybean | endoplasmic reticulum | 57.32 | 59.87 |
| KRG90387 | Soybean | extracellular | 56.71 | 59.24 |
| TraesCS4A01G415500.1 | Wheat | extracellular | 54.88 | 57.32 |
| Solyc06g053660.2.1 | Tomato | plasma membrane | 54.27 | 56.69 |
| TraesCS4B01G316300.1 | Wheat | extracellular | 53.05 | 55.41 |
| Os03t0149200-01 | Rice | extracellular | 53.05 | 55.41 |
| TraesCS4D01G312900.1 | Wheat | extracellular | 53.05 | 55.41 |
| EER92848 | Sorghum | extracellular | 52.44 | 54.78 |
| HORVU4Hr1G080140.1 | Barley | extracellular | 52.44 | 54.78 |
| Zm00001d032568_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 35.98 | 54.63 |
| CDY49421 | Canola | extracellular | 51.83 | 54.49 |
| GSMUA_Achr2P04100_001 | Banana | extracellular | 52.44 | 54.43 |
| CDY47153 | Canola | endoplasmic reticulum | 52.44 | 54.43 |
| CDY12466 | Canola | endoplasmic reticulum | 52.44 | 54.43 |
| GSMUA_Achr4P26720_001 | Banana | extracellular | 51.22 | 53.85 |
| Os04t0181100-01 | Rice | plasma membrane | 51.22 | 53.5 |
| CDY12771 | Canola | extracellular | 50.61 | 53.21 |
| GSMUA_Achr1P01370_001 | Banana | extracellular | 50.61 | 53.21 |
| Zm00001d048402_P001 | Maize | extracellular, golgi, plasma membrane | 50.61 | 52.87 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, extracellular, plasma membrane | 50.0 | 52.23 |
| TraesCS2D01G029000.1 | Wheat | extracellular | 50.0 | 52.23 |
| OQU81217 | Sorghum | extracellular | 50.0 | 52.23 |
| Os10t0445500-01 | Rice | plasma membrane | 50.0 | 51.9 |
| Zm00001d027680_P003 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 51.83 | 51.83 |
| TraesCS2B01G040200.1 | Wheat | extracellular | 49.39 | 51.59 |
| TraesCS2A01G026900.1 | Wheat | extracellular | 49.39 | 51.59 |
| GSMUA_Achr8P14320_001 | Banana | plasma membrane | 48.17 | 50.0 |
| Zm00001d032483_P001 | Maize | endoplasmic reticulum, extracellular, vacuole | 37.2 | 49.19 |
| Zm00001d018662_P001 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 46.95 | 48.12 |
| KRH73866 | Soybean | plastid | 35.37 | 38.93 |
| PGSC0003DMT400042097 | Potato | cytosol | 43.9 | 36.92 |
| Zm00001d025020_P001 | Maize | extracellular, golgi, plasma membrane | 50.61 | 34.3 |
Protein Annotations
| EnsemblPlants:CDX86640 | EnsemblPlantsGene:GSBRNA2T00145306001 | GO:A0A078DBP1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:HR_lesion | PANTHER:PTHR31474 | PANTHER:PTHR31474:SF4 | PFAM:PF05514 | ProteinID:CDX86640 | ProteinID:CDX86640.1 |
| SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EB4530 | MapMan:35.2 | : |
Description
BnaC08g00630D
Coordinates
chrLK031846:+:1292998..1294583
Molecular Weight (calculated)
17857.0 Da
IEP (calculated)
10.424
GRAVY (calculated)
0.503
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLHLTKAHLS SRLGVALPDI EVKQVVWAIV GLKGLGGLLF VVGNVFGAYL LAVYLVVVSP
101: ILYDFYNFGP QDREFSLLFT EFLQSVALLG ALLFFIGMKN STTTSSSSSA KRNLKKRTPK PKAA
101: ILYDFYNFGP QDREFSLLFT EFLQSVALLG ALLFFIGMKN STTTSSSSSA KRNLKKRTPK PKAA
001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA
Arabidopsis Description
At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.