Factsheet for TraesCS2B01G040200.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G171000.1
TraesCS1B01G186300.1
TraesCS1D01G168700.2
TraesCS2A01G368500.1
TraesCS2A01G590600.1
TraesCS2B01G385700.2
TraesCS2B01G593000.1
TraesCS2D01G365300.2
TraesCS2D01G563600.1
TraesCS2D01G563700.1
TraesCS6A01G237600.1
TraesCS6A01G272000.1
TraesCS6B01G266100.1
TraesCS6B01G299600.1
TraesCS6D01G220300.1
TraesCS6D01G252200.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04340.1	TraesCS1A01G171000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1B01G186300.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS1D01G168700.2	AT1G03630.1	21798944
AT1G04340.1	TraesCS2A01G590600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2B01G593000.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563600.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS2D01G563700.1	AT1G03630.1	21798944
AT1G04340.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT1G04340.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT5G43460.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT5G43460.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT5G43460.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G026900.1	Wheat	extracellular	99.36	99.36
TraesCS2D01G029000.1	Wheat	extracellular	98.73	98.73
Os04t0181100-01	Rice	plasma membrane	84.71	84.71
OQU81217	Sorghum	extracellular	77.71	77.71
GSMUA_Achr4P26720_001	Banana	extracellular	73.89	74.36
TraesCS4B01G316300.1	Wheat	extracellular	72.61	72.61
GSMUA_Achr1P01370_001	Banana	extracellular	71.97	72.44
GSMUA_Achr8P14320_001	Banana	plasma membrane	71.97	71.52
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	68.79	68.79
KRH32166	Soybean	endoplasmic reticulum	61.15	61.54
KRH67349	Soybean	plasma membrane	60.51	60.51
KRG95647	Soybean	plasma membrane	57.96	57.96
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	59.24	57.76
KRH19536	Soybean	endoplasmic reticulum	57.32	57.69
VIT_05s0049g00200.t01	Wine grape	extracellular	55.41	55.41
CDY12771	Canola	extracellular	54.78	55.13
Bra041032.1-P	Field mustard	extracellular	54.14	54.49
CDY47153	Canola	endoplasmic reticulum	54.78	54.43
CDY12466	Canola	endoplasmic reticulum	54.78	54.43
CDY49421	Canola	extracellular	53.5	53.85
Bra039861.1-P	Field mustard	plasma membrane	54.14	53.8
AT4G14420.1	Thale cress	plasma membrane	53.5	53.16
Solyc03g005470.2.1	Tomato	plastid	52.87	52.53
CDY59304	Canola	plasma membrane	52.23	52.23
AT1G04340.1	Thale cress	plasma membrane	52.23	51.57
AT5G43460.1	Thale cress	extracellular	50.32	51.3
KRG90387	Soybean	extracellular	50.96	50.96
CDY32939	Canola	plasma membrane	50.96	50.96
Bra027498.1-P	Field mustard	plasma membrane	50.96	50.96
KRG92302	Soybean	extracellular	50.32	50.32
KRH31721	Soybean	endoplasmic reticulum	50.32	50.32
CDY60669	Canola	extracellular, plasma membrane, vacuole	51.59	50.0
Bra015305.1-P	Field mustard	extracellular, plasma membrane, vacuole	51.59	50.0
KRH34500	Soybean	extracellular	49.68	49.68
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	76.43	49.59
CDX86640	Canola	extracellular, plasma membrane, vacuole	51.59	49.39
CDY18220	Canola	extracellular, plasma membrane, vacuole	50.96	49.38
CDY15499	Canola	plasma membrane	51.59	49.09
Bra030565.1-P	Field mustard	plasma membrane	51.59	49.09
Solyc06g053660.2.1	Tomato	plasma membrane	47.77	47.77
PGSC0003DMT400044245	Potato	cytosol	49.68	44.07
VIT_05s0049g00210.t01	Wine grape	plastid	61.15	41.74
PGSC0003DMT400034860	Potato	plastid	47.13	40.22
KRH73866	Soybean	plastid	35.03	36.91
CDY10063	Canola	plasma membrane	38.85	33.7
PGSC0003DMT400042097	Potato	cytosol	40.76	32.82

Protein Annotations

EnsemblPlants:TraesCS2B01G040200.1	EnsemblPlantsGene:TraesCS2B01G040200	InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF5	PFAM:PF05514
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2B:+:18260788..18263434

Molecular Weight (calculated)

17387.6 Da

IEP (calculated)

10.587

GRAVY (calculated)

0.582

Length

157 amino acids

Sequence
(BLAST)

001: MGFVSFVGRV LFASVFLLSA YQEFSEFGTD GGPAAKSLKP KFNLFVKQVS AGIGMAVPHI DIKSVIAFTM FLKAFGGLLF IISSSFGALV LLVYLAFITP
101: VVYDFYNYDM ESQQFAKLFT MFSQNLALFG ALLFFLGMKN SIPRRHSKRR AAKAKTT

Best Arabidopsis Sequence Match ( AT1G04340.1 )
(BLAST)

001: MGFFSFLGRV LFASLFILSA WQMFNDFGTD GGPAAKELAP KLDLTKAHLS SILGVSLPNL EVKQVVWAIV ALKGLGGLLF VIGNIFGAYL LAVYLVVVSP
101: ILYDFYNYGP EDRQFSLLLT EFLQSVALLG ALLFFIGMKN STTSSKRILK KRTPKPKAA

Arabidopsis Description

At1g04340/F19P19_23 [Source:UniProtKB/TrEMBL;Acc:O22690]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.