CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 8
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32166	Soybean	endoplasmic reticulum	95.51	95.51
KRH67349	Soybean	plasma membrane	83.33	82.8
KRG95647	Soybean	plasma membrane	82.69	82.17
GSMUA_Achr1P01370_001	Banana	extracellular	64.74	64.74
Os03t0149200-01	Rice	extracellular	64.74	64.33
GSMUA_Achr2P04100_001	Banana	extracellular	64.74	63.92
GSMUA_Achr4P26720_001	Banana	extracellular	63.46	63.46
HORVU4Hr1G080140.1	Barley	extracellular	63.46	63.06
TraesCS4D01G312900.1	Wheat	extracellular	63.46	63.06
CDY47153	Canola	endoplasmic reticulum	63.46	62.66
CDY12466	Canola	endoplasmic reticulum	63.46	62.66
TraesCS4B01G316300.1	Wheat	extracellular	62.82	62.42
TraesCS4A01G415500.1	Wheat	extracellular	62.82	62.42
Bra041032.1-P	Field mustard	extracellular	62.18	62.18
GSMUA_Achr11P...	Banana	endoplasmic reticulum, extracellular, plasma membrane	62.18	61.78
CDY49421	Canola	extracellular	61.54	61.54
CDY12771	Canola	extracellular	61.54	61.54
AT4G14420.1	Thale cress	plasma membrane	62.18	61.39
Bra039861.1-P	Field mustard	plasma membrane	62.18	61.39
EER92848	Sorghum	extracellular	61.54	61.15
Zm00001d048402_P001	Maize	extracellular, golgi, plasma membrane	60.9	60.51
Os04t0181100-01	Rice	plasma membrane	60.9	60.51
Solyc09g089670.2.1	Tomato	extracellular, plasma membrane, vacuole	62.18	60.25
Solyc03g005470.2.1	Tomato	plastid	60.9	60.13
Zm00001d027680_P003	Maize	endoplasmic reticulum, extracellular, plasma membrane	62.82	59.76
Os10t0445500-01	Rice	plasma membrane	60.26	59.49
OQU81217	Sorghum	extracellular	58.97	58.6
GSMUA_Achr8P14320_001	Banana	plasma membrane	58.97	58.23
TraesCS2B01G040200.1	Wheat	extracellular	57.69	57.32
TraesCS2A01G026900.1	Wheat	extracellular	57.05	56.69
Zm00001d032568_P001	Maize	endoplasmic reticulum, extracellular, vacuole	39.1	56.48
TraesCS2D01G029000.1	Wheat	extracellular	56.41	56.05
Zm00001d018662_P001	Maize	endoplasmic reticulum, extracellular, plasma membrane	55.77	54.38
KRH31721	Soybean	endoplasmic reticulum	54.49	54.14
KRG90387	Soybean	extracellular	54.49	54.14
KRH34500	Soybean	extracellular	54.49	54.14
KRG92302	Soybean	extracellular	53.85	53.5
Zm00001d032483_P001	Maize	endoplasmic reticulum, extracellular, vacuole	41.03	51.61
VIT_05s0049g00210.t01	Wine grape	plastid	70.51	47.83
PGSC0003DMT400044245	Potato	cytosol	53.85	47.46
PGSC0003DMT400034860	Potato	plastid	55.77	47.28
Zm00001d025020_P001	Maize	extracellular, golgi, plasma membrane	57.05	36.78
KRH73866	Soybean	plastid	33.97	35.57

Protein Annotations

EMBL:ACUP02008183	EnsemblPlants:KRH19536	EnsemblPlantsGene:GLYMA_13G121600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:HR_lesion	PANTHER:PTHR31474	PANTHER:PTHR31474:SF9	PFAM:PF05514	ProteinID:KRH19536	ProteinID:KRH19536.1
SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0001D8430A	UniProt:I1LYI2	MapMan:35.2

Description

hypothetical protein

Coordinates

chr13:+:23465944..23468796

Molecular Weight (calculated)

17425.4 Da

IEP (calculated)

10.231

GRAVY (calculated)

0.326

Length

156 amino acids

Sequence
(BLAST)

001: MAFASFLGRV LFASVFILSA YQQFNEYGVD GGPATKALRP KFDAFTHRVH SQVGFQIPEI NLKFLIAGAI ALKGLGGVLF IFGSSFGALL LLLHQLIATP
101: IHYDFYNYDS EDKEFTQLFI KFTQNMALFG AVLFFIGMKN SIPKRVPKKA PKTKTY

Best Arabidopsis Sequence Match ( AT4G14420.1 )
(BLAST)

001: MELASFLGRA LFVSVFLLSA WQEFNDFGED GGRSAKSLKP KFNAFVNHVT THTGQQLPPV DMKILVAAAI ALKGIGGLLF VFGSSLGAYL LLLHQAVATP
101: ILYDFYNYDV DRKEFGQLFS KFTQSLALLG GLLFFIGMKN SRKHGRQLRK KAPKAKAN

Arabidopsis Description

AT4g14420/dl3250c [Source:UniProtKB/TrEMBL;Acc:O23298]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.