Factsheet for VIT_10s0003g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 1
golgi 2
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032334.1-P	Field mustard	mitochondrion	37.5	57.81
Bra010814.1-P	Field mustard	plasma membrane	46.96	51.48
CDY43679	Canola	plasma membrane	48.31	41.09
CDY66765	Canola	cytosol, peroxisome, plasma membrane	48.99	39.62
CDX99851	Canola	mitochondrion	49.66	35.51
Bra021906.1-P	Field mustard	cytosol, peroxisome, plasma membrane	49.32	35.01
KRH11077	Soybean	cytosol, nucleus, peroxisome	56.42	33.0
KRH59037	Soybean	cytosol, nucleus, plasma membrane, plastid	54.39	30.9
PGSC0003DMT400073048	Potato	nucleus	58.45	30.84
Solyc02g071900.2.1	Tomato	cytosol	58.45	30.84
AT2G34380.1	Thale cress	cytosol, nucleus, plasma membrane	51.69	30.06
CDY35278	Canola	cytosol, nucleus, plasma membrane	49.66	29.58
AT1G29760.1	Thale cress	cytosol, nucleus, plasma membrane	52.03	29.28
VIT_19s0014g00840.t01	Wine grape	plasma membrane	49.66	28.6
CDX90209	Canola	cytosol, nucleus, plasma membrane	48.31	28.09
Os09t0534000-01	Rice	cytosol, nucleus, plasma membrane, plastid	42.91	27.79
GSMUA_Achr9P24190_001	Banana	cytosol, peroxisome, plasma membrane	46.28	26.92
Zm00001d021305_P001	Maize	plastid	41.22	26.41
EER99253	Sorghum	plastid	41.55	26.28
TraesCS5A01G322900.1	Wheat	cytosol, nucleus, vacuole	39.53	25.22
HORVU5Hr1G082480.1	Barley	mitochondrion	39.19	25.11
VIT_04s0023g00480.t01	Wine grape	plasma membrane, plastid, vacuole	21.28	24.8
TraesCS5B01G323400.1	Wheat	cytosol, nucleus, plasma membrane, plastid	40.2	22.71

Protein Annotations

ArrayExpress:VIT_10s0003g01840	EMBL:FN595992	EnsemblPlants:VIT_10s0003g01840.t01	EnsemblPlantsGene:VIT_10s0003g01840	GO:GO:0005575	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0019915	InterPro:Seipin	PANTHER:PTHR21212	PANTHER:PTHR21212:SF1
PFAM:PF06775	ProteinID:CBI30736	ProteinID:CBI30736.3	TIGR:TC70654	TMHMM:TMhelix	UniParc:UPI0001BE3849
UniProt:D7TJR4	MapMan:5.9.1	:	:	:	:

Description

No Description!

Coordinates

chr10:-:3278240..3281380

Molecular Weight (calculated)

33826.9 Da

IEP (calculated)

9.458

GRAVY (calculated)

0.249

Length

296 amino acids

Sequence
(BLAST)

001: MRHGRDYLMG KVLRLWNIAY GSVNPFISEW LKEHKSMWKL LSRFGWSLLL SVYVASILCG LLVAAFVVSG FVMRYLVEEP IRMEEALNFD YTKNSPVAFV
101: PIKGLHVIPP NHKLQVTVML TLPESEYNRN LGVFQVRVDF LSAEYRRLAS ASRTCMLQFK SMPIRLLLTF FKMAPLVAGY LSESQTLNVH FSGFTEGDEP
201: TACLKVTIEQ RAEYRPGAGI PEIYASSLIL ESELPLVKRI LWYWKKTVFI WISMTVFLME LVFTLICCRP IILPRVRPRD GSASGSATQD NVLIQS

Best Arabidopsis Sequence Match ( AT1G29760.1 )
(BLAST)

001: MDSESESESN PSTTDEFDRF LDAPDEFYYD CLPIRSNSHQ PSSLLRRRKS AHRRDLISSD IETEPSSSSD GFDVGEKSSY VEKNAELRGD IDTSDVIEST
101: KDSIDLSSEK ENDLDVISSS GNDMDVIDSG RNRVDPFQEE STVTTVSSDD QGDDDYAGSV PQFREPPNST EWSLLGFLVG LVIKAIEFQV SFMTSLLTFP
201: PWLLRNCFLF FFDPFSTIRF GRRFLMARVA GISDMIFGYM NPFRLKDTKQ MLSIVCKFGW GMFWAVYVGI VLFGLLVSSL MIGGYVINRI ADKPFEVKET
301: LNFDYTKNSP EAYVPISSCA GVECEGSCKE SNEMSKIRGL RVIPRDQKLD IILSMTLPES AYNKNLGMFQ VRVDFLSVDG QTIASIRRPC MLRFRSEPIR
401: LVQTFFKVVP LVTGYVSEIQ TLSLKLKGFV EKDIPTACLK IIIEQRAEFR PGAGIPELYD ASLSVESGLP FFRKIIWKWR KTLFVWISMS LFITELLFTL
501: VCCRPLIIPR TQPRDRSPSN PTGVWR

Arabidopsis Description

SEI2Seipin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4I340]
SUBAcon: [plasma membrane,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.